Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 HDHD2-201ENST00000300605 2212 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 AC012313.3-202ENST00000599109 3322 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 BCL11A-203ENST00000358510 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 SHTN1-201ENST00000260777 5308 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 C6orf118-201ENST00000230301 1812 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 COX20-201ENST00000366528 568 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 ZNRF2P3-201ENST00000424200 374 ntBASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 RAB43-208ENST00000615093 783 ntTSL 5 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 RAD23A-203ENST00000586534 1746 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 AL603756.1-201ENST00000606511 2163 ntBASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 OTOP2-202ENST00000580223 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 SOWAHA-201ENST00000378693 3211 ntAPPRIS P1 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 RSPH6A-201ENST00000221538 2456 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 COMP-203ENST00000542601 2707 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
CCDC28AQ8IWP9 ANAPC2-201ENST00000323927 2632 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 CTNNAL1-204ENST00000374595 2522 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 SIN3B-201ENST00000248054 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ILVBL-209ENST00000534378 2067 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 WSCD1-210ENST00000574946 5884 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 TMEM175-212ENST00000508204 1399 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 PML-211ENST00000564428 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 PA2G4-201ENST00000303305 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 NRXN1-220ENST00000611589 1857 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ZNF133-204ENST00000396026 2717 ntAPPRIS P3 TSL 3 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 MIR31HG-201ENST00000304425 745 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 SAPCD2P1-201ENST00000395413 1184 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 AC010141.2-201ENST00000452426 721 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 KRT18P14-201ENST00000534205 1250 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DUX4L2-201ENST00000561772 1275 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DUX4-206ENST00000616166 1275 ntAPPRIS P2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DUX4L6-201ENST00000626483 1275 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DUX4L1-201ENST00000627662 1275 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DUX4L8-201ENST00000629013 1275 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DUX4L3-201ENST00000630187 1275 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DUX4L7-201ENST00000630678 1275 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DUX4L5-201ENST00000630834 1275 ntBASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 LINC00917-207ENST00000601556 2618 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 SYTL3-205ENST00000611299 2896 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 SLC5A7-202ENST00000409059 2032 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ARHGAP33-201ENST00000007510 2545 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 PBX3-207ENST00000447726 2789 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 MED26-207ENST00000611692 1444 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 TTBK1-201ENST00000259750 6932 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 MRPL2-202ENST00000388752 1588 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 TALDO1-201ENST00000319006 1346 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
CCDC28AQ8IWP9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 ESX1-201ENST00000372588 1495 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 AC104581.4-201ENST00000623126 3052 ntBASIC15.14■□□□□ 0.01
CCDC28AQ8IWP9 SIK3-201ENST00000375300 6213 ntAPPRIS P3 TSL 2 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms