Protein–RNA interactions for Protein: Q6P9H4

CNKSR3, Connector enhancer of kinase suppressor of ras 3, humanhuman

Predictions only

Length 555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNKSR3Q6P9H4 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 COPE-211ENST00000600932 1144 ntTSL 5 BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 NPAS4-204ENST00000639555 878 ntTSL 5 BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 ZAR1L-202ENST00000533490 1564 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 ZNF787-202ENST00000587279 1657 ntTSL 2 BASIC19.43■□□□□ 0.7
CNKSR3Q6P9H4 MEPCE-202ENST00000414441 2261 ntTSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 CBLC-202ENST00000341505 1441 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 HOXC6-201ENST00000243108 1733 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 TEAD2-202ENST00000377214 2440 ntAPPRIS ALT1 TSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 TMEM219-201ENST00000279396 999 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 TMEM59-202ENST00000371337 600 ntTSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC073621.1-201ENST00000392730 636 ntBASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 JMJD7-203ENST00000408047 1192 ntTSL 5 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC211486.1-202ENST00000416371 468 ntBASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC096633.1-201ENST00000422446 749 ntBASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 PRYP5-201ENST00000451909 266 ntBASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC108751.1-201ENST00000490852 363 ntBASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC211476.1-201ENST00000503899 468 ntBASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC105202.1-202ENST00000522060 834 ntTSL 3 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AL137786.1-202ENST00000555496 789 ntTSL 5 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CNKSR3Q6P9H4 AC083864.1-201ENST00000381493 1497 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 ACBD4-207ENST00000586346 1579 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 CSPG5-201ENST00000264723 4080 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 DUSP12-201ENST00000367943 1270 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 GYG2P1-204ENST00000382966 639 ntTSL 3 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 AP006288.1-201ENST00000446065 395 ntBASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 AC136632.2-201ENST00000512891 861 ntBASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 BAX-213ENST00000539787 458 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 AL121820.2-201ENST00000556301 279 ntTSL 2 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 AD001527.2-201ENST00000622994 785 ntBASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 AL662799.1-201ENST00000630418 496 ntTSL 5 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 RNF38-202ENST00000350199 5104 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 IDH3G-202ENST00000370092 1712 ntTSL 5 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 SRSF2-205ENST00000508921 1390 ntTSL 2 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 SIGLEC16-201ENST00000599858 1437 ntBASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 TMEM98-206ENST00000579849 4434 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 MED29-202ENST00000594368 1471 ntTSL 2 BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 TMEM82-201ENST00000375782 1520 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CNKSR3Q6P9H4 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 SWSAP1-201ENST00000312423 1684 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 PLD3-205ENST00000409419 1966 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC19.4■□□□□ 0.7
CNKSR3Q6P9H4 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CNKSR3Q6P9H4 PCGF6-201ENST00000337211 1950 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CNKSR3Q6P9H4 OGFOD2-207ENST00000536150 1956 ntTSL 2 BASIC19.39■□□□□ 0.7
CNKSR3Q6P9H4 SUSD1-202ENST00000374263 2973 ntAPPRIS ALT2 TSL 2 BASIC19.39■□□□□ 0.7
CNKSR3Q6P9H4 SMPD3-203ENST00000563226 2093 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CNKSR3Q6P9H4 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CNKSR3Q6P9H4 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms