Protein–RNA interactions for Protein: Q5VIR6

VPS53, Vacuolar protein sorting-associated protein 53 homolog, humanhuman

Predictions only

Length 699 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53Q5VIR6 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 FAM86EP-206ENST00000510506 987 ntBASIC21.88■■□□□ 1.09
VPS53Q5VIR6 AC087623.2-201ENST00000528407 534 ntTSL 4 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 ZNF444P1-201ENST00000559497 298 ntBASIC21.88■■□□□ 1.09
VPS53Q5VIR6 AC009065.1-201ENST00000564055 1225 ntBASIC21.88■■□□□ 1.09
VPS53Q5VIR6 NARF-204ENST00000390006 1766 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 CENPT-215ENST00000564817 1638 ntAPPRIS ALT2 TSL 5 BASIC21.88■■□□□ 1.09
VPS53Q5VIR6 BAZ1B-201ENST00000339594 6102 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 KCNC4-203ENST00000413138 3018 ntAPPRIS ALT2 TSL 5 BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 C6orf132-201ENST00000341865 6210 ntAPPRIS P2 TSL 5 BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 SLC35A3-217ENST00000639807 2767 ntTSL 5 BASIC21.87■■□□□ 1.09
VPS53Q5VIR6 PHGDH-209ENST00000641074 1780 ntBASIC21.87■■□□□ 1.09
VPS53Q5VIR6 GMCL1P1-201ENST00000463439 1581 ntBASIC21.87■■□□□ 1.09
VPS53Q5VIR6 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 IFFO1-202ENST00000356896 2680 ntTSL 5 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 AC068880.1-201ENST00000507289 2297 ntBASIC21.86■■□□□ 1.09
VPS53Q5VIR6 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 TDP2-202ENST00000378198 2071 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 KCNH2-203ENST00000430723 2648 ntTSL 5 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 POR-209ENST00000439269 1858 ntTSL 2 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 FLYWCH1P1-201ENST00000460917 1874 ntBASIC21.86■■□□□ 1.09
VPS53Q5VIR6 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 SCT-201ENST00000176195 366 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 POU4F3-201ENST00000230732 1182 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 ARMC10P1-201ENST00000313754 855 ntBASIC21.86■■□□□ 1.09
VPS53Q5VIR6 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 BEX1-201ENST00000372728 864 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 MIR662-201ENST00000384847 95 ntBASIC21.86■■□□□ 1.09
VPS53Q5VIR6 AC004540.1-201ENST00000439120 891 ntTSL 2 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 ILKAP-212ENST00000622223 1088 ntTSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 NOP14-204ENST00000502735 2723 ntAPPRIS ALT2 TSL 5 BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 NFATC1-217ENST00000591814 4819 ntAPPRIS ALT2 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 TRIM33-201ENST00000358465 8339 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
VPS53Q5VIR6 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 AC090340.1-201ENST00000620778 4980 ntBASIC21.85■■□□□ 1.09
VPS53Q5VIR6 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 TBC1D7-205ENST00000379307 1084 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 TSPY8-203ENST00000383005 435 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 RNF126P1-202ENST00000569893 925 ntBASIC21.85■■□□□ 1.09
VPS53Q5VIR6 LITAF-220ENST00000620789 692 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 POC1B-GALNT4-201ENST00000547474 2207 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC21.85■■□□□ 1.09
VPS53Q5VIR6 ZNFX1-203ENST00000371754 5235 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 AC005332.1-201ENST00000577698 1310 ntBASIC21.84■■□□□ 1.09
VPS53Q5VIR6 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 TNNI3-201ENST00000344887 840 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 SSSCA1-206ENST00000531405 879 ntTSL 2 BASIC21.84■■□□□ 1.09
VPS53Q5VIR6 CD320-202ENST00000537716 1119 ntTSL 2 BASIC21.84■■□□□ 1.09
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms