Protein–RNA interactions for Protein: Q15459

SF3A1, Splicing factor 3A subunit 1, humanhuman

Known RBP Predictions only

Length 793 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1Q15459 MMP23A-201ENST00000234610 1017 ntBASIC20.95■□□□□ 0.94
SF3A1Q15459 HDAC11-205ENST00000404548 577 ntTSL 4 BASIC20.95■□□□□ 0.94
SF3A1Q15459 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.95■□□□□ 0.94
SF3A1Q15459 AC112497.1-201ENST00000624824 639 ntBASIC20.95■□□□□ 0.94
SF3A1Q15459 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 TNFAIP1-202ENST00000544907 1656 ntTSL 2 BASIC20.95■□□□□ 0.94
SF3A1Q15459 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC20.95■□□□□ 0.94
SF3A1Q15459 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC20.95■□□□□ 0.94
SF3A1Q15459 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC20.95■□□□□ 0.94
SF3A1Q15459 GNAS-203ENST00000306120 1878 ntBASIC20.94■□□□□ 0.94
SF3A1Q15459 RELA-226ENST00000612991 2266 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.94■□□□□ 0.94
SF3A1Q15459 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 RAI2-201ENST00000331511 2317 ntAPPRIS P1 TSL 2 BASIC20.94■□□□□ 0.94
SF3A1Q15459 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC20.94■□□□□ 0.94
SF3A1Q15459 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.94■□□□□ 0.94
SF3A1Q15459 ARHGAP11A-201ENST00000361627 5898 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 MATN4-205ENST00000537548 1991 ntAPPRIS ALT2 TSL 5 BASIC20.94■□□□□ 0.94
SF3A1Q15459 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 TBXAS1-204ENST00000416849 2505 ntTSL 5 BASIC20.94■□□□□ 0.94
SF3A1Q15459 KRAS-201ENST00000256078 1119 ntAPPRIS P4 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 SPDYE2-201ENST00000341656 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 AL596275.1-201ENST00000423464 877 ntBASIC20.94■□□□□ 0.94
SF3A1Q15459 SLC25A6P5-201ENST00000435663 894 ntBASIC20.94■□□□□ 0.94
SF3A1Q15459 SPDYE2B-202ENST00000455020 1219 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 DIO1-206ENST00000525202 558 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 AC104390.1-201ENST00000555663 520 ntBASIC20.94■□□□□ 0.94
SF3A1Q15459 NAPSB-206ENST00000562112 1266 ntBASIC20.94■□□□□ 0.94
SF3A1Q15459 AC005606.2-201ENST00000564438 614 ntTSL 2 BASIC20.94■□□□□ 0.94
SF3A1Q15459 PRR29-205ENST00000579184 1052 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
SF3A1Q15459 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 TSLP-203ENST00000420978 2621 ntAPPRIS ALT2 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 ANKRD6-201ENST00000339746 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 HOTTIP-202ENST00000472494 2285 ntTSL 2 BASIC20.94■□□□□ 0.94
SF3A1Q15459 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.94
SF3A1Q15459 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC20.94■□□□□ 0.94
SF3A1Q15459 STK4-201ENST00000372801 2038 ntTSL 2 BASIC20.94■□□□□ 0.94
SF3A1Q15459 BDKRB1-202ENST00000553356 1526 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
SF3A1Q15459 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC20.93■□□□□ 0.94
SF3A1Q15459 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SF3A1Q15459 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC20.93■□□□□ 0.94
SF3A1Q15459 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 AC128688.1-201ENST00000487626 519 ntBASIC20.93■□□□□ 0.94
SF3A1Q15459 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC20.93■□□□□ 0.94
SF3A1Q15459 HRASLS5-205ENST00000539221 1167 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 AL929554.1-201ENST00000568665 460 ntAPPRIS P1 TSL 3 BASIC20.93■□□□□ 0.94
SF3A1Q15459 ATG4B-226ENST00000625810 370 ntTSL 4 BASIC20.93■□□□□ 0.94
SF3A1Q15459 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
SF3A1Q15459 THAP12-201ENST00000260045 3300 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 PLD3-207ENST00000409735 2140 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC20.93■□□□□ 0.94
SF3A1Q15459 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 MRAS-204ENST00000464896 1534 ntTSL 2 BASIC20.93■□□□□ 0.94
SF3A1Q15459 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
SF3A1Q15459 REPS1-202ENST00000367663 2607 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
SF3A1Q15459 C21orf58-203ENST00000397680 2624 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SF3A1Q15459 PPHLN1-213ENST00000549190 1777 ntTSL 5 BASIC20.92■□□□□ 0.94
SF3A1Q15459 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 OR6D1P-203ENST00000641209 4860 ntBASIC20.92■□□□□ 0.94
SF3A1Q15459 MYO1B-202ENST00000339514 5026 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC20.92■□□□□ 0.94
SF3A1Q15459 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
SF3A1Q15459 CXADR-204ENST00000400166 1080 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 TSPY1-201ENST00000423647 1171 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 AL954642.1-201ENST00000428088 538 ntTSL 3 BASIC20.92■□□□□ 0.94
SF3A1Q15459 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 ECEL1P2-202ENST00000465689 757 ntBASIC20.92■□□□□ 0.94
SF3A1Q15459 SIGLEC15-202ENST00000546268 1054 ntTSL 2 BASIC20.92■□□□□ 0.94
SF3A1Q15459 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC20.92■□□□□ 0.94
SF3A1Q15459 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 LRRC58-201ENST00000295628 7903 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 LINC01126-201ENST00000623515 1646 ntBASIC20.92■□□□□ 0.94
SF3A1Q15459 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
SF3A1Q15459 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 55.1 ms