Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 SEMA3B-202ENST00000418576 1765 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX3P41225 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX3P41225 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX3P41225 BSCL2-201ENST00000278893 1364 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
SOX3P41225 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.07■□□□□ 0.32
SOX3P41225 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 ISOC2-202ENST00000425675 998 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX3P41225 FAM86EP-206ENST00000510506 987 ntBASIC17.07■□□□□ 0.32
SOX3P41225 RPL26L1-205ENST00000519974 695 ntAPPRIS P1 TSL 3 BASIC17.07■□□□□ 0.32
SOX3P41225 LY6E-213ENST00000522528 606 ntTSL 3 BASIC17.07■□□□□ 0.32
SOX3P41225 ZNF444P1-201ENST00000559497 298 ntBASIC17.07■□□□□ 0.32
SOX3P41225 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX3P41225 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.07■□□□□ 0.32
SOX3P41225 C9orf66-201ENST00000382387 2918 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
SOX3P41225 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 NOP9-202ENST00000396802 1942 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX3P41225 SSX2IP-210ENST00000605755 1933 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX3P41225 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 OLFM1-201ENST00000252854 2591 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 ALDH1A3-201ENST00000329841 3924 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC17.07■□□□□ 0.32
SOX3P41225 MEN1-203ENST00000337652 3162 ntAPPRIS P3 TSL 5 BASIC17.07■□□□□ 0.32
SOX3P41225 AGO3-202ENST00000324350 1726 ntTSL 2 BASIC17.07■□□□□ 0.32
SOX3P41225 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 TLE4-205ENST00000376544 4871 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
SOX3P41225 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
SOX3P41225 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX3P41225 VPS26B-202ENST00000525095 1558 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 RXRB-202ENST00000374685 2846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 CYP51A1P1-201ENST00000492267 1507 ntBASIC17.06■□□□□ 0.32
SOX3P41225 HDAC10-201ENST00000216271 2687 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 KDM4B-202ENST00000381759 3058 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 FAM50A-202ENST00000393600 1352 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 AC018755.2-202ENST00000429354 1926 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 GFY-201ENST00000576655 1876 ntAPPRIS P1 TSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 SHC3-202ENST00000375835 9768 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 C8orf58-207ENST00000615223 1848 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
SOX3P41225 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 TYMSOS-201ENST00000323813 844 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC17.06■□□□□ 0.32
SOX3P41225 HBZP1-201ENST00000354915 429 ntBASIC17.06■□□□□ 0.32
SOX3P41225 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC17.06■□□□□ 0.32
SOX3P41225 MCRIP1-206ENST00000573478 1123 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX3P41225 AC092902.2-222ENST00000626312 568 ntTSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 RNPS1-202ENST00000320225 2241 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC17.06■□□□□ 0.32
SOX3P41225 ACBD5-201ENST00000375888 1747 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 GPSM2-201ENST00000264126 3032 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 TEKT5-201ENST00000283025 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.06■□□□□ 0.32
SOX3P41225 UBAP1-203ENST00000379186 2524 ntTSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
SOX3P41225 NCAN-201ENST00000252575 6387 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
SOX3P41225 ATP2A3-201ENST00000309890 4826 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX3P41225 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 STXBP2-202ENST00000414284 1859 ntAPPRIS ALT1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 CCNA1-202ENST00000440264 1758 ntAPPRIS P1 TSL 2 BASIC17.05■□□□□ 0.32
SOX3P41225 C1QTNF1-209ENST00000581774 1368 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 KMT2E-207ENST00000476671 2523 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.05■□□□□ 0.32
SOX3P41225 NARFL-218ENST00000568545 2486 ntTSL 2 BASIC17.05■□□□□ 0.32
SOX3P41225 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX3P41225 TICAM1-202ENST00000621756 1650 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX3P41225 GPX4-201ENST00000354171 919 ntAPPRIS P2 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 CLN3-202ENST00000355477 1173 ntTSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 PCED1CP-201ENST00000419887 785 ntBASIC17.05■□□□□ 0.32
SOX3P41225 VENTXP5-201ENST00000523979 775 ntBASIC17.05■□□□□ 0.32
SOX3P41225 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC17.05■□□□□ 0.32
SOX3P41225 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC17.05■□□□□ 0.32
SOX3P41225 DBP-204ENST00000599385 709 ntTSL 3 BASIC17.05■□□□□ 0.32
SOX3P41225 AC091076.1-201ENST00000610741 619 ntBASIC17.05■□□□□ 0.32
SOX3P41225 FBXL22-204ENST00000638704 729 ntAPPRIS ALT2 TSL 2 BASIC17.05■□□□□ 0.32
SOX3P41225 AC139713.2-201ENST00000641328 2723 ntBASIC17.05■□□□□ 0.32
SOX3P41225 C3orf18-201ENST00000357203 2655 ntAPPRIS P1 TSL 1 (best) BASIC17.05■□□□□ 0.32
SOX3P41225 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC17.05■□□□□ 0.32
SOX3P41225 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC17.05■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms