Protein–RNA interactions for Protein: P28702

RXRB, Retinoic acid receptor RXR-beta, humanhuman

Predictions only

Length 533 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RXRBP28702 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC23.59■■□□□ 1.37
RXRBP28702 VAMP4-202ENST00000367740 1193 ntAPPRIS ALT1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC23.59■■□□□ 1.37
RXRBP28702 AGTRAP-202ENST00000376627 1055 ntTSL 5 BASIC23.59■■□□□ 1.37
RXRBP28702 WDR45-208ENST00000396681 1146 ntTSL 5 BASIC23.59■■□□□ 1.37
RXRBP28702 LINC00473-201ENST00000444465 798 ntTSL 3 BASIC23.59■■□□□ 1.37
RXRBP28702 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC23.59■■□□□ 1.37
RXRBP28702 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC23.59■■□□□ 1.37
RXRBP28702 AC108010.1-201ENST00000605862 1107 ntTSL 5 BASIC23.59■■□□□ 1.37
RXRBP28702 CU104787.1-201ENST00000624155 288 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 INHA-201ENST00000243786 1468 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 SLC7A9-202ENST00000587772 1568 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC23.59■■□□□ 1.37
RXRBP28702 PAQR4-203ENST00000572687 2251 ntTSL 2 BASIC23.59■■□□□ 1.37
RXRBP28702 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 SDC1-203ENST00000403076 1523 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
RXRBP28702 AL391422.3-201ENST00000603791 2761 ntBASIC23.58■■□□□ 1.37
RXRBP28702 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC23.58■■□□□ 1.37
RXRBP28702 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC23.58■■□□□ 1.37
RXRBP28702 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RXRBP28702 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RXRBP28702 IRF8-203ENST00000563180 1394 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RXRBP28702 RPS12-201ENST00000230050 631 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
RXRBP28702 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
RXRBP28702 PIN1P1-201ENST00000412108 996 ntBASIC23.58■■□□□ 1.37
RXRBP28702 ADH5P3-201ENST00000433842 1137 ntBASIC23.58■■□□□ 1.37
RXRBP28702 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC23.58■■□□□ 1.37
RXRBP28702 IGHV3OR16-6-201ENST00000568775 360 ntBASIC23.58■■□□□ 1.37
RXRBP28702 AC138474.1-201ENST00000586630 523 ntTSL 3 BASIC23.58■■□□□ 1.37
RXRBP28702 MED16-214ENST00000617672 554 ntTSL 5 BASIC23.58■■□□□ 1.37
RXRBP28702 AL512408.1-201ENST00000569378 2000 ntBASIC23.58■■□□□ 1.37
RXRBP28702 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
RXRBP28702 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC23.58■■□□□ 1.36
RXRBP28702 ZNF331-202ENST00000411977 2248 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC23.57■■□□□ 1.36
RXRBP28702 ZDHHC4-203ENST00000396707 1461 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 TMPRSS12-201ENST00000398458 1450 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 COPS7A-210ENST00000539735 1832 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
RXRBP28702 TSSK3-201ENST00000373534 1368 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 TOMM5-201ENST00000321301 751 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 SPEM1-201ENST00000323675 982 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 LINC01116-202ENST00000339037 838 ntTSL 3 BASIC23.57■■□□□ 1.36
RXRBP28702 GABARAPL1-202ENST00000421801 855 ntTSL 2 BASIC23.57■■□□□ 1.36
RXRBP28702 AL020989.1-201ENST00000422979 469 ntBASIC23.57■■□□□ 1.36
RXRBP28702 AL357497.1-201ENST00000436249 666 ntTSL 3 BASIC23.57■■□□□ 1.36
RXRBP28702 AC125807.1-201ENST00000483097 614 ntBASIC23.57■■□□□ 1.36
RXRBP28702 IGHV3-42-201ENST00000520410 361 ntBASIC23.57■■□□□ 1.36
RXRBP28702 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC23.57■■□□□ 1.36
RXRBP28702 ZNF667-AS1-202ENST00000586091 678 ntTSL 2 BASIC23.57■■□□□ 1.36
RXRBP28702 PRF1-203ENST00000638674 1080 ntTSL 5 BASIC23.57■■□□□ 1.36
RXRBP28702 AL805961.1-202ENST00000641562 540 ntBASIC23.57■■□□□ 1.36
RXRBP28702 SLC35B1-201ENST00000240333 1850 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC23.57■■□□□ 1.36
RXRBP28702 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
RXRBP28702 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC23.57■■□□□ 1.36
RXRBP28702 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC23.57■■□□□ 1.36
RXRBP28702 NFKBID-210ENST00000606253 1736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RXRBP28702 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RXRBP28702 TMEM37-202ENST00000409826 794 ntTSL 3 BASIC23.56■■□□□ 1.36
RXRBP28702 GRTP1-AS1-201ENST00000419199 867 ntTSL 5 BASIC23.56■■□□□ 1.36
RXRBP28702 TREML5P-201ENST00000421694 576 ntBASIC23.56■■□□□ 1.36
RXRBP28702 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC23.56■■□□□ 1.36
RXRBP28702 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC23.56■■□□□ 1.36
RXRBP28702 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
RXRBP28702 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RXRBP28702 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
RXRBP28702 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC23.56■■□□□ 1.36
RXRBP28702 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC23.56■■□□□ 1.36
RXRBP28702 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC23.56■■□□□ 1.36
RXRBP28702 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC23.56■■□□□ 1.36
RXRBP28702 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC23.56■■□□□ 1.36
RXRBP28702 ALDH3A2-225ENST00000630662 1558 ntTSL 5 BASIC23.56■■□□□ 1.36
RXRBP28702 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC23.56■■□□□ 1.36
RXRBP28702 IKBKG-207ENST00000611071 2103 ntAPPRIS P3 TSL 1 (best) BASIC23.56■■□□□ 1.36
RXRBP28702 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC23.56■■□□□ 1.36
RXRBP28702 CYP51A1P2-201ENST00000419457 1499 ntBASIC23.56■■□□□ 1.36
RXRBP28702 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RXRBP28702 ICAM4-203ENST00000393717 1390 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
RXRBP28702 TOR1A-201ENST00000351698 2076 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
RXRBP28702 UBQLN4P1-201ENST00000461599 1801 ntBASIC23.55■■□□□ 1.36
RXRBP28702 ERCC1-201ENST00000013807 1278 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RXRBP28702 PIP5KL1-201ENST00000300432 1104 ntTSL 1 (best) BASIC23.55■■□□□ 1.36
RXRBP28702 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC23.55■■□□□ 1.36
RXRBP28702 ITPR1-AS1-201ENST00000412804 858 ntTSL 2 BASIC23.55■■□□□ 1.36
RXRBP28702 AL137003.1-201ENST00000423260 491 ntTSL 5 BASIC23.55■■□□□ 1.36
RXRBP28702 Z97056.1-201ENST00000433230 556 ntTSL 2 BASIC23.55■■□□□ 1.36
RXRBP28702 AC122714.2-201ENST00000502787 707 ntBASIC23.55■■□□□ 1.36
RXRBP28702 AC027088.1-201ENST00000557966 1117 ntTSL 2 BASIC23.55■■□□□ 1.36
RXRBP28702 AC140878.1-201ENST00000565277 250 ntBASIC23.55■■□□□ 1.36
RXRBP28702 AC092070.4-201ENST00000599803 507 ntTSL 5 BASIC23.55■■□□□ 1.36
RXRBP28702 AP001059.3-201ENST00000619053 235 ntBASIC23.55■■□□□ 1.36
RXRBP28702 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC23.55■■□□□ 1.36
RXRBP28702 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC23.55■■□□□ 1.36
RXRBP28702 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 23.5 ms