Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 TMEM177-204ENST00000424086 1738 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL5A1P20908 PTGIR-201ENST00000291294 2107 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 SYCE1-203ENST00000368517 1377 ntAPPRIS P3 TSL 5 BASIC17.3■□□□□ 0.36
COL5A1P20908 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.3■□□□□ 0.36
COL5A1P20908 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC17.3■□□□□ 0.36
COL5A1P20908 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 DBNL-213ENST00000452943 1513 ntTSL 2 BASIC17.3■□□□□ 0.36
COL5A1P20908 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.3■□□□□ 0.36
COL5A1P20908 MOXD1-203ENST00000392401 2191 ntTSL 4 BASIC17.3■□□□□ 0.36
COL5A1P20908 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 CRELD1-206ENST00000452070 1778 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
COL5A1P20908 AL049569.1-201ENST00000446261 636 ntTSL 3 BASIC17.3■□□□□ 0.36
COL5A1P20908 AC112482.1-201ENST00000492080 688 ntBASIC17.3■□□□□ 0.36
COL5A1P20908 AP005019.1-201ENST00000545254 664 ntTSL 3 BASIC17.3■□□□□ 0.36
COL5A1P20908 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC17.3■□□□□ 0.36
COL5A1P20908 AC134684.3-201ENST00000641758 218 ntBASIC17.3■□□□□ 0.36
COL5A1P20908 TRA2A-201ENST00000297071 1845 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 ESPN-205ENST00000461727 1869 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 PPP1R3F-202ENST00000376188 2443 ntTSL 2 BASIC17.3■□□□□ 0.36
COL5A1P20908 CDK17-203ENST00000543119 2442 ntTSL 2 BASIC17.3■□□□□ 0.36
COL5A1P20908 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC17.3■□□□□ 0.36
COL5A1P20908 DHRS4L2-203ENST00000534993 1450 ntTSL 3 BASIC17.3■□□□□ 0.36
COL5A1P20908 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
COL5A1P20908 PDE9A-205ENST00000349112 1616 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A1P20908 FPGS-203ENST00000373247 2279 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A1P20908 SPAG1-206ENST00000520643 1723 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A1P20908 AC018445.3-201ENST00000624177 1945 ntBASIC17.29■□□□□ 0.36
COL5A1P20908 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A1P20908 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A1P20908 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
COL5A1P20908 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC17.29■□□□□ 0.36
COL5A1P20908 AC108751.1-201ENST00000490852 363 ntBASIC17.29■□□□□ 0.36
COL5A1P20908 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A1P20908 MRNIP-205ENST00000518235 1244 ntAPPRIS ALT2 TSL 2 BASIC17.29■□□□□ 0.36
COL5A1P20908 MRPL49-203ENST00000526171 501 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A1P20908 LINC01413-201ENST00000564843 772 ntTSL 3 BASIC17.29■□□□□ 0.36
COL5A1P20908 SEC11C-205ENST00000588875 718 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A1P20908 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.29■□□□□ 0.36
COL5A1P20908 MTDHP5-201ENST00000598980 586 ntBASIC17.29■□□□□ 0.36
COL5A1P20908 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.29■□□□□ 0.36
COL5A1P20908 TRABD-203ENST00000395827 2172 ntAPPRIS P3 TSL 5 BASIC17.29■□□□□ 0.36
COL5A1P20908 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC17.29■□□□□ 0.36
COL5A1P20908 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A1P20908 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A1P20908 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC17.29■□□□□ 0.36
COL5A1P20908 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A1P20908 CARD9-202ENST00000371734 1814 ntTSL 5 BASIC17.29■□□□□ 0.36
COL5A1P20908 ATPIF1-202ENST00000465645 1855 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A1P20908 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
COL5A1P20908 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 GSTZ1-202ENST00000349555 867 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A1P20908 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.28■□□□□ 0.36
COL5A1P20908 RPS8P6-201ENST00000426177 609 ntBASIC17.28■□□□□ 0.36
COL5A1P20908 AC122714.2-201ENST00000502787 707 ntBASIC17.28■□□□□ 0.36
COL5A1P20908 GSTZ1-207ENST00000553586 979 ntAPPRIS ALT1 TSL 5 BASIC17.28■□□□□ 0.36
COL5A1P20908 SDCCAG3P1-201ENST00000589292 1150 ntBASIC17.28■□□□□ 0.36
COL5A1P20908 AC074135.2-201ENST00000600896 510 ntTSL 3 BASIC17.28■□□□□ 0.36
COL5A1P20908 STXBP2-222ENST00000612033 1188 ntTSL 5 BASIC17.28■□□□□ 0.36
COL5A1P20908 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 SMIM22-210ENST00000615471 928 ntAPPRIS ALT2 TSL 3 BASIC17.28■□□□□ 0.36
COL5A1P20908 CR381653.1-203ENST00000625153 577 ntTSL 5 BASIC17.28■□□□□ 0.36
COL5A1P20908 KNOP1-205ENST00000568230 1311 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
COL5A1P20908 C11orf68-203ENST00000530188 1528 ntAPPRIS ALT2 BASIC17.28■□□□□ 0.36
COL5A1P20908 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC17.28■□□□□ 0.36
COL5A1P20908 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 SLC27A3-214ENST00000624995 2413 ntAPPRIS P2 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A1P20908 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 GCDH-216ENST00000591470 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 CIAO1-203ENST00000488633 1533 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A1P20908 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A1P20908 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A1P20908 EHMT1-216ENST00000493484 1182 ntTSL 3 BASIC17.28■□□□□ 0.36
COL5A1P20908 AC136632.2-201ENST00000512891 861 ntBASIC17.28■□□□□ 0.36
COL5A1P20908 CPSF1-207ENST00000531727 704 ntTSL 3 BASIC17.28■□□□□ 0.36
COL5A1P20908 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A1P20908 ELOF1-204ENST00000587806 1172 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A1P20908 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC17.28■□□□□ 0.36
COL5A1P20908 AL022328.2-201ENST00000608016 640 ntTSL 3 BASIC17.28■□□□□ 0.36
COL5A1P20908 AD001527.2-201ENST00000622994 785 ntBASIC17.28■□□□□ 0.36
COL5A1P20908 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
COL5A1P20908 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC17.27■□□□□ 0.36
COL5A1P20908 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 LY6E-207ENST00000520466 1419 ntAPPRIS P2 TSL 2 BASIC17.27■□□□□ 0.36
COL5A1P20908 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC17.27■□□□□ 0.36
COL5A1P20908 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
COL5A1P20908 ENTPD8-202ENST00000371506 2222 ntAPPRIS P1 TSL 5 BASIC17.27■□□□□ 0.36
COL5A1P20908 AC097374.2-201ENST00000618617 1306 ntBASIC17.27■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 27.8 ms