Protein–RNA interactions for Protein: P12107

COL11A1, Collagen alpha-1(XI) chain, humanhuman

Predicted RBP Predictions only

Length 1,806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL11A1P12107 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC20.5■□□□□ 0.87
COL11A1P12107 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC20.5■□□□□ 0.87
COL11A1P12107 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL11A1P12107 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 ELOF1-201ENST00000252445 1019 ntAPPRIS P1 TSL 2 BASIC20.49■□□□□ 0.87
COL11A1P12107 MRPS16-201ENST00000372940 866 ntTSL 2 BASIC20.49■□□□□ 0.87
COL11A1P12107 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 SPINT1-AS1-203ENST00000565315 629 ntTSL 2 BASIC20.49■□□□□ 0.87
COL11A1P12107 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC20.49■□□□□ 0.87
COL11A1P12107 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 FAM215A-202ENST00000632077 792 ntBASIC20.49■□□□□ 0.87
COL11A1P12107 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 ATG3-201ENST00000283290 1570 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC20.49■□□□□ 0.87
COL11A1P12107 PTGES2-201ENST00000277462 1614 ntTSL 2 BASIC20.49■□□□□ 0.87
COL11A1P12107 CDCP2-202ENST00000530059 1623 ntAPPRIS ALT2 TSL 5 BASIC20.49■□□□□ 0.87
COL11A1P12107 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 PSTK-201ENST00000368887 1705 ntAPPRIS P2 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC20.49■□□□□ 0.87
COL11A1P12107 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 ALKBH4-201ENST00000292566 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
COL11A1P12107 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC20.48■□□□□ 0.87
COL11A1P12107 CBWD1-202ENST00000356521 1706 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 SRPX-202ENST00000432886 1725 ntTSL 2 BASIC20.48■□□□□ 0.87
COL11A1P12107 CTSG-201ENST00000216336 886 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 AC091180.3-201ENST00000506504 963 ntTSL 3 BASIC20.48■□□□□ 0.87
COL11A1P12107 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC20.48■□□□□ 0.87
COL11A1P12107 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 CCDC27-201ENST00000294600 2176 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC20.48■□□□□ 0.87
COL11A1P12107 CSF3-202ENST00000331769 1673 ntAPPRIS ALT2 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 ZHX1-C8orf76-201ENST00000357082 1257 ntAPPRIS P2 TSL 2 BASIC20.48■□□□□ 0.87
COL11A1P12107 INIP-202ENST00000374236 874 ntTSL 2 BASIC20.48■□□□□ 0.87
COL11A1P12107 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 LBH-204ENST00000406087 559 ntTSL 4 BASIC20.48■□□□□ 0.87
COL11A1P12107 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC20.48■□□□□ 0.87
COL11A1P12107 L2HGDH-205ENST00000555423 841 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC20.48■□□□□ 0.87
COL11A1P12107 AC107896.1-201ENST00000593212 548 ntTSL 4 BASIC20.48■□□□□ 0.87
COL11A1P12107 AC107918.4-202ENST00000641623 219 ntBASIC20.48■□□□□ 0.87
COL11A1P12107 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC20.48■□□□□ 0.87
COL11A1P12107 MAP3K5-201ENST00000359015 5197 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 TMPRSS2-206ENST00000458356 1701 ntAPPRIS P1 TSL 2 BASIC20.47■□□□□ 0.87
COL11A1P12107 FAM72B-207ENST00000619376 1659 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC20.47■□□□□ 0.87
COL11A1P12107 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 SLC38A10-201ENST00000288439 2708 ntAPPRIS P3 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.47■□□□□ 0.87
COL11A1P12107 LRCH3-207ENST00000441090 2034 ntTSL 2 BASIC20.47■□□□□ 0.87
COL11A1P12107 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC20.47■□□□□ 0.87
COL11A1P12107 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC20.47■□□□□ 0.87
COL11A1P12107 AL355310.2-201ENST00000369843 688 ntTSL 3 BASIC20.47■□□□□ 0.87
COL11A1P12107 KRT18P27-201ENST00000427733 1299 ntBASIC20.47■□□□□ 0.87
COL11A1P12107 ANKRD13D-218ENST00000515828 1111 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC20.47■□□□□ 0.87
COL11A1P12107 PAX9-204ENST00000554201 1289 ntTSL 2 BASIC20.47■□□□□ 0.87
COL11A1P12107 SDCCAG3P1-201ENST00000589292 1150 ntBASIC20.47■□□□□ 0.87
COL11A1P12107 FUT6-212ENST00000592563 1095 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 AL356488.2-201ENST00000602755 427 ntBASIC20.47■□□□□ 0.87
COL11A1P12107 AD001527.2-201ENST00000622994 785 ntBASIC20.47■□□□□ 0.87
COL11A1P12107 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC20.47■□□□□ 0.87
COL11A1P12107 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC20.47■□□□□ 0.87
COL11A1P12107 MIF4GD-204ENST00000577542 1531 ntTSL 3 BASIC20.47■□□□□ 0.87
COL11A1P12107 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC20.47■□□□□ 0.87
COL11A1P12107 FNDC8-201ENST00000158009 1388 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 AC091182.1-202ENST00000518765 713 ntTSL 2 BASIC20.46■□□□□ 0.87
COL11A1P12107 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC20.46■□□□□ 0.87
COL11A1P12107 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC20.46■□□□□ 0.87
COL11A1P12107 DCTPP1-203ENST00000567983 801 ntTSL 5 BASIC20.46■□□□□ 0.87
COL11A1P12107 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC20.46■□□□□ 0.87
COL11A1P12107 COLEC11-206ENST00000403096 1557 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 SOX21-201ENST00000376945 2778 ntAPPRIS P1 BASIC20.46■□□□□ 0.87
COL11A1P12107 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC20.46■□□□□ 0.87
COL11A1P12107 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC20.46■□□□□ 0.87
COL11A1P12107 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 KRTCAP2-201ENST00000295682 552 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 ZGLP1-201ENST00000403352 1028 ntAPPRIS ALT2 TSL 5 BASIC20.46■□□□□ 0.87
COL11A1P12107 AC122714.2-201ENST00000502787 707 ntBASIC20.46■□□□□ 0.87
COL11A1P12107 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC20.46■□□□□ 0.87
COL11A1P12107 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.46■□□□□ 0.87
COL11A1P12107 KIF1BP-201ENST00000361983 2544 ntAPPRIS P1 TSL 1 (best) BASIC20.45■□□□□ 0.86
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms