Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC4P09017 ZDHHC17-201ENST00000426126 5259 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 C5orf47-201ENST00000340147 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 GFI1B-208ENST00000636263 1604 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXC4P09017 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXC4P09017 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 RCHY1-208ENST00000512706 1011 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXC4P09017 IRF8-202ENST00000562492 946 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXC4P09017 KLK8-205ENST00000593490 267 ntTSL 3 BASIC17.62■□□□□ 0.41
HOXC4P09017 LDHAL6A-203ENST00000615355 1042 ntTSL 5 BASIC17.62■□□□□ 0.41
HOXC4P09017 AL355877.3-201ENST00000622820 899 ntBASIC17.62■□□□□ 0.41
HOXC4P09017 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC4P09017 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC4P09017 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 SIL1-202ENST00000394817 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 MICA-209ENST00000449934 1386 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC17.62■□□□□ 0.41
HOXC4P09017 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC17.62■□□□□ 0.41
HOXC4P09017 AC242426.3-201ENST00000440377 1571 ntTSL 2 BASIC17.62■□□□□ 0.41
HOXC4P09017 GRK6-201ENST00000355472 2939 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 MAN1B1-207ENST00000535144 2296 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXC4P09017 USP49-202ENST00000373010 2446 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 MAGEA3-203ENST00000598245 1762 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HOXC4P09017 MAGEA6-204ENST00000616035 1762 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 PPP1R3F-201ENST00000055335 3421 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
HOXC4P09017 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 MED16-201ENST00000269814 1199 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 PRSS27-201ENST00000302641 1130 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 ZNHIT1-201ENST00000305105 1225 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.61■□□□□ 0.41
HOXC4P09017 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 AC007967.3-201ENST00000434308 558 ntBASIC17.61■□□□□ 0.41
HOXC4P09017 ABCD1P5-201ENST00000445663 754 ntBASIC17.61■□□□□ 0.41
HOXC4P09017 PPIE-208ENST00000470213 927 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXC4P09017 AC122714.2-201ENST00000502787 707 ntBASIC17.61■□□□□ 0.41
HOXC4P09017 AK2-210ENST00000548033 936 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXC4P09017 AC064862.7-201ENST00000604520 867 ntBASIC17.61■□□□□ 0.41
HOXC4P09017 AXIN2-208ENST00000611991 1019 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 CHST13-202ENST00000615522 1146 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 HYOU1-212ENST00000532519 2162 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 KRT8P47-201ENST00000604727 1398 ntBASIC17.61■□□□□ 0.41
HOXC4P09017 AIRN-201ENST00000601203 4374 ntBASIC17.61■□□□□ 0.41
HOXC4P09017 APOA4-201ENST00000357780 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 AC002310.2-202ENST00000492040 1488 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 RHOBTB3-201ENST00000379982 5537 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 TCEAL4-201ENST00000372629 1511 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 HYAL1-203ENST00000395143 1522 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 SKOR2-202ENST00000425639 3899 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HOXC4P09017 TBC1D10C-209ENST00000542590 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HOXC4P09017 LIN28B-AS1-203ENST00000636682 1797 ntTSL 3 BASIC17.61■□□□□ 0.41
HOXC4P09017 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 PSAP-205ENST00000610929 1969 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 ZCWPW1-201ENST00000360951 2110 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
HOXC4P09017 C6orf223-202ENST00000439969 2757 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 NXPH2-201ENST00000272641 1052 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 FAM41C-202ENST00000432963 504 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 RBSN-204ENST00000449050 903 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 GOLGA7-203ENST00000518270 808 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
HOXC4P09017 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 AC010522.1-205ENST00000598031 606 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
HOXC4P09017 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC4P09017 SDR39U1-206ENST00000553930 1325 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC4P09017 HTD2-206ENST00000481972 1378 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 AC023830.1-201ENST00000569678 1543 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 HLA-A-203ENST00000376809 1611 ntAPPRIS P1 BASIC17.6■□□□□ 0.41
HOXC4P09017 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 LMLN-204ENST00000420910 2423 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC17.6■□□□□ 0.41
HOXC4P09017 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC17.6■□□□□ 0.41
HOXC4P09017 KANSL1L-203ENST00000418791 3562 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HOXC4P09017 YAP1-202ENST00000345877 5284 ntTSL 5 BASIC17.59■□□□□ 0.41
HOXC4P09017 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 RABL2B-205ENST00000395595 2428 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 CLASRP-203ENST00000391953 1941 ntTSL 2 BASIC17.59■□□□□ 0.41
HOXC4P09017 ASIC3-202ENST00000349064 1895 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
HOXC4P09017 SEH1L-202ENST00000399892 1846 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 58.3 ms