Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 KRT13-201ENST00000246635 1699 ntAPPRIS P4 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 ANXA6-201ENST00000354546 2593 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC17.55■□□□□ 0.4
CLDN9O95484 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 WRB-201ENST00000333781 1616 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 UNC5CL-202ENST00000373164 1620 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 AL360181.3-201ENST00000468317 1605 ntAPPRIS P1 TSL 5 BASIC17.55■□□□□ 0.4
CLDN9O95484 CCDC92-201ENST00000238156 2787 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 SCARB1-203ENST00000415380 2731 ntTSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 HOTAIR-201ENST00000424518 2421 ntTSL 5 BASIC17.55■□□□□ 0.4
CLDN9O95484 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 IFI6-201ENST00000339145 822 ntAPPRIS P4 TSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 ANK1-206ENST00000348036 622 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 AC131097.3-201ENST00000413820 1228 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 AC087499.1-201ENST00000418141 1075 ntBASIC17.55■□□□□ 0.4
CLDN9O95484 ERI1-203ENST00000519292 2107 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC17.55■□□□□ 0.4
CLDN9O95484 C16orf74-206ENST00000602766 832 ntAPPRIS ALT2 TSL 3 BASIC17.55■□□□□ 0.4
CLDN9O95484 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 AC141257.4-201ENST00000634557 245 ntBASIC17.55■□□□□ 0.4
CLDN9O95484 AC136944.6-201ENST00000634818 245 ntBASIC17.55■□□□□ 0.4
CLDN9O95484 WDSUB1-203ENST00000392796 1812 ntAPPRIS P1 TSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 CRMP1-202ENST00000397890 2911 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 PHYKPL-201ENST00000308158 2038 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC17.55■□□□□ 0.4
CLDN9O95484 LUC7L-201ENST00000293872 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.55■□□□□ 0.4
CLDN9O95484 PACS2-203ENST00000447393 6365 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 RNPS1-219ENST00000566397 1685 ntTSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 ARFRP1-207ENST00000612157 1698 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 EHMT1-236ENST00000637161 5049 ntAPPRIS ALT2 TSL 5 BASIC17.55■□□□□ 0.4
CLDN9O95484 GNE-204ENST00000539208 2190 ntTSL 2 BASIC17.55■□□□□ 0.4
CLDN9O95484 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC17.55■□□□□ 0.4
CLDN9O95484 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC17.54■□□□□ 0.4
CLDN9O95484 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.54■□□□□ 0.4
CLDN9O95484 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 NUMBL-207ENST00000598779 2249 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 AZU1-201ENST00000233997 908 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 NDUFAF2-201ENST00000296597 719 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 AC003075.1-204ENST00000433005 540 ntTSL 2 BASIC17.54■□□□□ 0.4
CLDN9O95484 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.54■□□□□ 0.4
CLDN9O95484 TMEM9B-AS1-201ENST00000525484 1053 ntTSL 5 BASIC17.54■□□□□ 0.4
CLDN9O95484 FOSL1-203ENST00000531493 1200 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC17.54■□□□□ 0.4
CLDN9O95484 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC17.54■□□□□ 0.4
CLDN9O95484 C16orf45-201ENST00000300006 2404 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 HDAC10-202ENST00000349505 1950 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CLDN9O95484 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC17.53■□□□□ 0.4
CLDN9O95484 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 ZNF74-201ENST00000357502 2788 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 SHE-201ENST00000304760 6243 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 KRT18P55-202ENST00000578578 1546 ntBASIC17.53■□□□□ 0.4
CLDN9O95484 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC17.53■□□□□ 0.4
CLDN9O95484 PABPC1L-217ENST00000537323 1910 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 ZNF280D-205ENST00000559000 4726 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
CLDN9O95484 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 ILK-203ENST00000420936 1692 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 PBK-203ENST00000522944 1499 ntTSL 2 BASIC17.53■□□□□ 0.4
CLDN9O95484 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 PVRIG2P-201ENST00000435460 978 ntBASIC17.53■□□□□ 0.4
CLDN9O95484 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC17.53■□□□□ 0.4
CLDN9O95484 ADCYAP1-202ENST00000450565 918 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC17.53■□□□□ 0.4
CLDN9O95484 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC17.53■□□□□ 0.4
CLDN9O95484 AL138966.2-201ENST00000621997 464 ntBASIC17.53■□□□□ 0.4
CLDN9O95484 AL157888.1-201ENST00000631930 593 ntBASIC17.53■□□□□ 0.4
CLDN9O95484 AL590627.2-201ENST00000637510 144 ntTSL 5 BASIC17.53■□□□□ 0.4
CLDN9O95484 GPANK1-202ENST00000375895 1800 ntAPPRIS P1 TSL 5 BASIC17.53■□□□□ 0.4
CLDN9O95484 TAP1-201ENST00000354258 2959 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 ZNF416-201ENST00000196489 2561 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
CLDN9O95484 GAMT-202ENST00000447102 1769 ntTSL 2 BASIC17.53■□□□□ 0.4
CLDN9O95484 ZIC4-212ENST00000484399 1774 ntAPPRIS P1 TSL 2 BASIC17.53■□□□□ 0.4
CLDN9O95484 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.53■□□□□ 0.4
CLDN9O95484 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 26.8 ms