Protein–RNA interactions for Protein: O95477

ABCA1, ATP-binding cassette sub-family A member 1, humanhuman

Predictions only

Length 2,261 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ABCA1O95477 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
ABCA1O95477 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA1O95477 PCID2-202ENST00000337344 1898 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
ABCA1O95477 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 SGCB-201ENST00000381431 4431 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 CCDC187-205ENST00000638797 10126 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
ABCA1O95477 MIR564-202ENST00000385049 94 ntBASIC15.18■□□□□ 0.02
ABCA1O95477 NUS1P2-201ENST00000417358 873 ntBASIC15.18■□□□□ 0.02
ABCA1O95477 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC15.18■□□□□ 0.02
ABCA1O95477 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC15.18■□□□□ 0.02
ABCA1O95477 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC15.18■□□□□ 0.02
ABCA1O95477 AC139887.3-201ENST00000568585 713 ntBASIC15.18■□□□□ 0.02
ABCA1O95477 AC087289.1-201ENST00000586808 890 ntTSL 5 BASIC15.18■□□□□ 0.02
ABCA1O95477 NAT14-202ENST00000587400 416 ntTSL 5 BASIC15.18■□□□□ 0.02
ABCA1O95477 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA1O95477 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 PODXL2-201ENST00000342480 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 LCAT-201ENST00000264005 1507 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 B3GNT2-201ENST00000301998 2763 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 FMR1-205ENST00000370475 4308 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
ABCA1O95477 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 AC092183.1-201ENST00000469884 875 ntBASIC15.18■□□□□ 0.02
ABCA1O95477 HFE-210ENST00000470149 1123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 MRPL52-210ENST00000555345 895 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA1O95477 YPEL3-209ENST00000566595 796 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
ABCA1O95477 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA1O95477 PIN1-206ENST00000587625 878 ntTSL 2 BASIC15.18■□□□□ 0.02
ABCA1O95477 CIRBP-235ENST00000591935 746 ntAPPRIS ALT1 TSL 3 BASIC15.18■□□□□ 0.02
ABCA1O95477 AL139424.1-201ENST00000607572 797 ntBASIC15.18■□□□□ 0.02
ABCA1O95477 MRM3-201ENST00000304478 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
ABCA1O95477 IRGC-201ENST00000244314 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 CLINT1-207ENST00000523908 2346 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 TEX264-215ENST00000611400 1488 ntAPPRIS P3 TSL 5 BASIC15.17■□□□□ 0.02
ABCA1O95477 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 TMPRSS5-209ENST00000544634 1524 ntTSL 2 BASIC15.17■□□□□ 0.02
ABCA1O95477 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 SLC25A20-201ENST00000319017 1879 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
ABCA1O95477 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
ABCA1O95477 DRAP1-202ENST00000376991 819 ntTSL 5 BASIC15.17■□□□□ 0.02
ABCA1O95477 POM121L3P-201ENST00000419331 1163 ntBASIC15.17■□□□□ 0.02
ABCA1O95477 NMU-202ENST00000505262 693 ntTSL 3 BASIC15.17■□□□□ 0.02
ABCA1O95477 LITAF-211ENST00000572255 516 ntTSL 4 BASIC15.17■□□□□ 0.02
ABCA1O95477 LITAF-215ENST00000574763 717 ntAPPRIS P1 TSL 3 BASIC15.17■□□□□ 0.02
ABCA1O95477 MIR3180-4-201ENST00000582223 153 ntBASIC15.17■□□□□ 0.02
ABCA1O95477 UBE2R2-201ENST00000263228 4075 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
ABCA1O95477 PLCH2-203ENST00000378486 4837 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 PLCH2-204ENST00000419816 4837 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
ABCA1O95477 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 TTC3-203ENST00000399010 2115 ntTSL 5 BASIC15.17■□□□□ 0.02
ABCA1O95477 PFN2-203ENST00000452853 1780 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 ABCG4-206ENST00000622721 2553 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 INO80E-201ENST00000304516 1489 ntTSL 2 BASIC15.17■□□□□ 0.02
ABCA1O95477 HOXD10-201ENST00000249501 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.17■□□□□ 0.02
ABCA1O95477 RN7SL606P-201ENST00000472779 293 ntBASIC15.17■□□□□ 0.02
ABCA1O95477 AC092725.1-201ENST00000565783 499 ntTSL 4 BASIC15.17■□□□□ 0.02
ABCA1O95477 AC008608.2-201ENST00000606089 416 ntBASIC15.17■□□□□ 0.02
ABCA1O95477 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC15.17■□□□□ 0.02
ABCA1O95477 IQSEC2-210ENST00000639161 936 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
ABCA1O95477 UBL3-201ENST00000380680 4384 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
ABCA1O95477 PVR-204ENST00000406449 1344 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 RBL2-201ENST00000262133 4906 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 CERCAM-202ENST00000372842 5201 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
ABCA1O95477 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 NDFIP1-201ENST00000253814 3851 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 TNXA-203ENST00000507684 2038 ntBASIC15.16■□□□□ 0.02
ABCA1O95477 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 TMEM74-201ENST00000297459 1741 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 YBX3-201ENST00000228251 1796 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 GNMT-201ENST00000372808 1072 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 HCG15-203ENST00000438190 1032 ntTSL 3 BASIC15.16■□□□□ 0.02
ABCA1O95477 HNRNPDP1-201ENST00000439535 754 ntBASIC15.16■□□□□ 0.02
ABCA1O95477 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 UPP1-201ENST00000331803 1932 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 ANKRD65-201ENST00000427211 1976 ntTSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 PDE8A-202ENST00000339708 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC15.16■□□□□ 0.02
ABCA1O95477 FGFR1-203ENST00000341462 6054 ntTSL 5 BASIC15.16■□□□□ 0.02
ABCA1O95477 ZHX3-212ENST00000558993 1528 ntTSL 5 BASIC15.16■□□□□ 0.02
ABCA1O95477 KHNYN-206ENST00000556842 2443 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
ABCA1O95477 LRPPRC-202ENST00000409659 1610 ntTSL 5 BASIC15.16■□□□□ 0.02
ABCA1O95477 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
ABCA1O95477 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
ABCA1O95477 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.9 ms