Protein–RNA interactions for Protein: O75400

PRPF40A, Pre-mRNA-processing factor 40 homolog A, humanhuman

Known RBP Predictions only

Length 957 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40AO75400 PRR18-201ENST00000322583 3084 ntAPPRIS P2 BASIC21.12■□□□□ 0.97
PRPF40AO75400 RAD23A-201ENST00000316856 1736 ntAPPRIS ALT1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC21.12■□□□□ 0.97
PRPF40AO75400 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC21.12■□□□□ 0.97
PRPF40AO75400 CXorf67-201ENST00000342995 1929 ntAPPRIS P1 BASIC21.12■□□□□ 0.97
PRPF40AO75400 PRSS53-201ENST00000280606 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PRPF40AO75400 DOCK7-203ENST00000404627 2678 ntTSL 2 BASIC21.12■□□□□ 0.97
PRPF40AO75400 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC21.11■□□□□ 0.97
PRPF40AO75400 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PRPF40AO75400 PAPD5-203ENST00000561678 2916 ntTSL 5 BASIC21.11■□□□□ 0.97
PRPF40AO75400 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PRPF40AO75400 ZNF256-202ENST00000598928 1958 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 C4orf32-201ENST00000309733 8901 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 MIR718-201ENST00000390190 70 ntBASIC21.11■□□□□ 0.97
PRPF40AO75400 AP000593.1-201ENST00000393668 712 ntBASIC21.11■□□□□ 0.97
PRPF40AO75400 AC004951.3-201ENST00000418645 1148 ntBASIC21.11■□□□□ 0.97
PRPF40AO75400 AL596275.1-201ENST00000423464 877 ntBASIC21.11■□□□□ 0.97
PRPF40AO75400 AL353807.1-201ENST00000427475 662 ntBASIC21.11■□□□□ 0.97
PRPF40AO75400 AC008040.2-201ENST00000461049 708 ntBASIC21.11■□□□□ 0.97
PRPF40AO75400 NDUFA13-203ENST00000503283 825 ntTSL 2 BASIC21.11■□□□□ 0.97
PRPF40AO75400 AC093752.1-201ENST00000511950 605 ntTSL 4 BASIC21.11■□□□□ 0.97
PRPF40AO75400 RARRES2P10-201ENST00000564312 460 ntBASIC21.11■□□□□ 0.97
PRPF40AO75400 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC21.11■□□□□ 0.97
PRPF40AO75400 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC21.11■□□□□ 0.97
PRPF40AO75400 CD24-201ENST00000606017 2180 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 NUDT17-201ENST00000334513 1473 ntAPPRIS P1 TSL 5 BASIC21.11■□□□□ 0.97
PRPF40AO75400 CRTAC1-201ENST00000309155 1946 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 A4GALT-203ENST00000401850 2321 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 KRT8P50-201ENST00000562022 1438 ntBASIC21.11■□□□□ 0.97
PRPF40AO75400 ARHGAP4-204ENST00000393721 2721 ntTSL 5 BASIC21.11■□□□□ 0.97
PRPF40AO75400 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 TRAF3IP1-202ENST00000391993 4003 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PRPF40AO75400 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC21.11■□□□□ 0.97
PRPF40AO75400 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC21.11■□□□□ 0.97
PRPF40AO75400 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC21.1■□□□□ 0.97
PRPF40AO75400 PCK2-205ENST00000558096 2433 ntTSL 2 BASIC21.1■□□□□ 0.97
PRPF40AO75400 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC21.1■□□□□ 0.97
PRPF40AO75400 NKILA-202ENST00000614771 2598 ntBASIC21.1■□□□□ 0.97
PRPF40AO75400 ANKIB1-201ENST00000265742 6081 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 MRPL3-201ENST00000264995 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC21.1■□□□□ 0.97
PRPF40AO75400 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 CNOT6-202ENST00000393356 6303 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC21.1■□□□□ 0.97
PRPF40AO75400 AC011676.5-201ENST00000624864 2660 ntBASIC21.1■□□□□ 0.97
PRPF40AO75400 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.1■□□□□ 0.97
PRPF40AO75400 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 AK2-201ENST00000354858 1021 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 AMN1-211ENST00000541931 880 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC21.1■□□□□ 0.97
PRPF40AO75400 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
PRPF40AO75400 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
PRPF40AO75400 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC21.1■□□□□ 0.97
PRPF40AO75400 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.1■□□□□ 0.97
PRPF40AO75400 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 AL135905.2-201ENST00000584934 1404 ntBASIC21.1■□□□□ 0.97
PRPF40AO75400 FBXO7-201ENST00000266087 2195 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 GABARAPL1-201ENST00000266458 1957 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 PODXL-202ENST00000378555 2105 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PRPF40AO75400 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC21.1■□□□□ 0.97
PRPF40AO75400 PTPRA-205ENST00000399903 3337 ntTSL 5 BASIC21.09■□□□□ 0.97
PRPF40AO75400 GALNT9-201ENST00000328957 2410 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC21.09■□□□□ 0.97
PRPF40AO75400 CREB3L1-206ENST00000621158 2687 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 TTC8-202ENST00000345383 2329 ntTSL 5 BASIC21.09■□□□□ 0.97
PRPF40AO75400 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC21.09■□□□□ 0.97
PRPF40AO75400 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC21.09■□□□□ 0.97
PRPF40AO75400 AL023806.1-201ENST00000603994 1649 ntBASIC21.09■□□□□ 0.97
PRPF40AO75400 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC21.09■□□□□ 0.97
PRPF40AO75400 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC21.09■□□□□ 0.97
PRPF40AO75400 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC21.09■□□□□ 0.97
PRPF40AO75400 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.09■□□□□ 0.97
PRPF40AO75400 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.09■□□□□ 0.97
PRPF40AO75400 Z99916.2-201ENST00000604037 246 ntBASIC21.09■□□□□ 0.97
PRPF40AO75400 ZNF584-209ENST00000599238 2288 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC21.09■□□□□ 0.97
PRPF40AO75400 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC21.09■□□□□ 0.97
PRPF40AO75400 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC21.09■□□□□ 0.97
PRPF40AO75400 AGAP6-201ENST00000374056 2703 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 NPAS3-202ENST00000356141 2802 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 FOSB-209ENST00000590335 2170 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 LUC7L-221ENST00000629543 1520 ntTSL 5 BASIC21.09■□□□□ 0.97
PRPF40AO75400 CISD2-201ENST00000273986 2327 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PRPF40AO75400 CYP2D7-201ENST00000358097 1655 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 24.5 ms