Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 HSPB1-201ENST00000248553 909 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 YBX2P1-201ENST00000394192 760 ntBASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 URGCP-206ENST00000446958 365 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 RPS27L-204ENST00000455271 923 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 ARAP1-AS1-201ENST00000542022 388 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 HEXIM2-207ENST00000592695 1246 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 AC025062.2-201ENST00000605477 670 ntBASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 HOTTIP_1.1-201ENST00000620415 57 ntBASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 NARF-204ENST00000390006 1766 ntTSL 2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 HDAC11-221ENST00000522202 1559 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
PCDHGA1Q9Y5H4 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 SOD2-201ENST00000337404 991 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 DPM3-201ENST00000341298 486 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 SRP19-202ENST00000445150 833 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 AC069287.3-201ENST00000527297 589 ntTSL 5 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 AC105339.3-201ENST00000560043 636 ntBASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 AC133919.2-201ENST00000565965 589 ntTSL 4 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 ECSIT-207ENST00000588998 818 ntTSL 3 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 AC010327.4-202ENST00000591484 748 ntBASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 AL139424.1-201ENST00000607572 797 ntBASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 MOGS-201ENST00000233616 2895 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 UROS-202ENST00000368778 1556 ntTSL 2 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 RASSF1-202ENST00000357043 1864 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
PCDHGA1Q9Y5H4 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 TSNAXIP1-202ENST00000415766 2338 ntAPPRIS ALT2 TSL 2 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 SLC22A18-203ENST00000380574 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 P2RY2-201ENST00000311131 2660 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 CD9-202ENST00000382515 1229 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 PMP22-202ENST00000395936 816 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 HMGN1P19-201ENST00000436976 333 ntBASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 RNA5SP416-201ENST00000516838 111 ntBASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 SDR39U1-202ENST00000538105 1041 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 AC107918.4-202ENST00000641623 219 ntBASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 CACNA1B-204ENST00000371357 9642 ntAPPRIS ALT2 TSL 5 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 MAPKAPK2-202ENST00000367103 2961 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 ANKS1A-201ENST00000360359 6347 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 ACBD6-201ENST00000367595 1670 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 KLC1-219ENST00000555836 2467 ntTSL 5 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 NSUN5P2-201ENST00000388955 1789 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC17.38■□□□□ 0.37
PCDHGA1Q9Y5H4 ACOT7-202ENST00000377842 1813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 PCCB-207ENST00000466072 1844 ntAPPRIS ALT2 TSL 3 BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 FER1L4-211ENST00000616283 1818 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 SPRYD7-204ENST00000613924 2285 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
PCDHGA1Q9Y5H4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 51.9 ms