Protein–RNA interactions for Protein: Q9H0D2

ZNF541, Zinc finger protein 541, humanhuman

Predictions only

Length 1,346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF541Q9H0D2 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF541Q9H0D2 C21orf59-201ENST00000290155 1692 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF541Q9H0D2 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.64■■□□□ 1.06
ZNF541Q9H0D2 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF541Q9H0D2 EFS-202ENST00000351354 2704 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF541Q9H0D2 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF541Q9H0D2 COA5-201ENST00000328709 1754 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
ZNF541Q9H0D2 EFNA4-202ENST00000368409 1263 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 WBP2-203ENST00000433525 928 ntTSL 2 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 MKNK2P1-201ENST00000437526 628 ntBASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 AC244107.1-201ENST00000442033 332 ntBASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 HCG4B-203ENST00000450128 991 ntBASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 PAEP-208ENST00000479141 990 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 RNASEK-207ENST00000552842 595 ntTSL 3 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 ATP6V0C-202ENST00000564973 1081 ntTSL 2 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 DCTPP1-204ENST00000568434 853 ntTSL 2 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 MIR4751-201ENST00000578027 74 ntBASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 FAM3A-215ENST00000447601 1800 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 GLYCTK-202ENST00000436784 1982 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 SDCBP2-201ENST00000339987 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 EBF4-202ENST00000380648 2910 ntAPPRIS P2 TSL 5 BASIC21.64■■□□□ 1.05
ZNF541Q9H0D2 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 FAM3A-201ENST00000322269 1815 ntTSL 5 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 PFDN6-201ENST00000374606 740 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 C6orf48-204ENST00000375639 712 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 BCRP1-201ENST00000444246 691 ntBASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 AC138304.1-201ENST00000563841 424 ntTSL 3 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 AL031432.2-201ENST00000566714 459 ntBASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 AL928711.1-201ENST00000570165 459 ntBASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 GSN-204ENST00000373818 2657 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 IL17RC-203ENST00000403601 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 SEC61A2-201ENST00000298428 1893 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
ZNF541Q9H0D2 INPP5J-204ENST00000402238 1564 ntTSL 2 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 AC006504.4-201ENST00000592118 1568 ntBASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 CORO1A-216ENST00000570045 1622 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 SNAI3-AS1-205ENST00000568633 2096 ntBASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 COLEC11-202ENST00000349077 1259 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 AL139400.1-201ENST00000366220 510 ntBASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 ANP32E-201ENST00000369114 1048 ntTSL 3 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 SPDYE21P-201ENST00000413323 827 ntBASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 PUS1-205ENST00000535067 838 ntTSL 3 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 AHSA1-208ENST00000555517 832 ntTSL 2 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 DMKN-213ENST00000447113 1611 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
ZNF541Q9H0D2 RUSC1-214ENST00000490373 1700 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 VN2R19P-201ENST00000442399 1052 ntBASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 HYAL1-206ENST00000447605 666 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 PRYP5-201ENST00000451909 266 ntBASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 RIMS4-202ENST00000541604 1036 ntAPPRIS ALT1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 COX5A-202ENST00000562233 441 ntTSL 3 BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 AD001527.2-201ENST00000622994 785 ntBASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 AC073107.1-201ENST00000633579 1962 ntTSL 5 BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 DHRS4L2-201ENST00000335125 1370 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 SIGLEC16-201ENST00000599858 1437 ntBASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
ZNF541Q9H0D2 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
ZNF541Q9H0D2 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.6■■□□□ 1.05
ZNF541Q9H0D2 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
ZNF541Q9H0D2 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
ZNF541Q9H0D2 METTL26-205ENST00000397666 726 ntTSL 2 BASIC21.6■■□□□ 1.05
ZNF541Q9H0D2 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC21.6■■□□□ 1.05
ZNF541Q9H0D2 MYL6-209ENST00000548293 753 ntAPPRIS P3 TSL 2 BASIC21.6■■□□□ 1.05
ZNF541Q9H0D2 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC21.6■■□□□ 1.05
ZNF541Q9H0D2 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC21.6■■□□□ 1.05
Retrieved 100 of 98,524 protein–RNA pairs in 52.5 ms