Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 PNOC-201ENST00000301908 1200 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CT47A4-201ENST00000415858 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CT47A9-201ENST00000417256 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CT47A6-201ENST00000419194 1298 ntAPPRIS P1 TSL 5 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CT47A10-201ENST00000430448 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CT47A5-201ENST00000439466 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 AL162457.2-201ENST00000447909 937 ntTSL 3 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 OAF-202ENST00000531220 815 ntAPPRIS ALT2 TSL 3 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 PRTN3-202ENST00000544537 1036 ntTSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 AC080080.1-201ENST00000625121 2420 ntBASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 GUCA1A-202ENST00000372958 1575 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
HERPUD2Q9BSE4 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 ORAI2-202ENST00000403646 2528 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 TCTN1-204ENST00000397659 1885 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 ZNF534-203ENST00000432303 956 ntTSL 2 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 FAM181A-203ENST00000556222 1162 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 AC015961.2-201ENST00000589281 701 ntTSL 3 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 AC005363.2-201ENST00000618631 242 ntBASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 AC008735.6-201ENST00000635964 1292 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 WDR18-202ENST00000585809 1608 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 COLCA2-201ENST00000398035 1414 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 LINC00683-201ENST00000578803 2221 ntTSL 2 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 ATP1B1-201ENST00000367815 1883 ntAPPRIS P1 TSL 1 (best) BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC18.8■□□□□ 0.6
HERPUD2Q9BSE4 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 KCNE3-201ENST00000310128 3143 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 ELAC2-202ENST00000395962 2924 ntTSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 AC012313.1-201ENST00000593393 3059 ntBASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 ARSA-204ENST00000395621 1918 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 PODN-203ENST00000395871 2744 ntTSL 5 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 AC141586.5-201ENST00000624546 2050 ntBASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 GRAMD4P1-201ENST00000435181 1110 ntBASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 FAHD2CP-202ENST00000443258 893 ntTSL 3 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 UNC5B-AS1-201ENST00000447119 647 ntTSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 MEAF6-205ENST00000448519 666 ntAPPRIS ALT1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 ABHD11-207ENST00000458339 890 ntTSL 3 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 REEP1-209ENST00000541910 969 ntTSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 SLC25A11-202ENST00000544061 952 ntTSL 3 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 LINC00167-201ENST00000530583 1419 ntBASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 THOC3-212ENST00000628318 1442 ntTSL 5 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 TNFAIP2-201ENST00000333007 4175 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 UBE2E1-202ENST00000346855 1398 ntTSL 3 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 STARD10-218ENST00000543304 1513 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 TCTN1-229ENST00000614115 1965 ntTSL 5 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC18.79■□□□□ 0.6
HERPUD2Q9BSE4 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 SSB-201ENST00000260956 1709 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
HERPUD2Q9BSE4 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.78■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 55 ms