Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 GPR149-201ENST00000389740 2323 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 AL023284.2-201ENST00000405850 579 ntBASIC15.87■□□□□ 0.13
NKX3-1Q99801 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 AC003982.1-201ENST00000477404 484 ntTSL 2 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 RARRES1-204ENST00000479756 839 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 NFATC1-206ENST00000542384 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 CHUK-201ENST00000370397 3625 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 LRCH1-201ENST00000311191 4710 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 DPP6-202ENST00000377770 3710 ntAPPRIS P4 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 MYB-205ENST00000367814 3302 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 METTL21A-203ENST00000411432 4805 ntAPPRIS P1 TSL 2 BASIC15.87■□□□□ 0.13
NKX3-1Q99801 DUS1L-201ENST00000306796 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
NKX3-1Q99801 RUBCN-206ENST00000449205 1603 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 AC009053.2-201ENST00000563701 2365 ntBASIC15.86■□□□□ 0.13
NKX3-1Q99801 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 MINDY2-202ENST00000450403 4820 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 IGF2-204ENST00000381406 5179 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 RIC8A-201ENST00000325207 2702 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 C5orf30-201ENST00000319933 3049 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 NADSYN1-201ENST00000319023 2773 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 C6orf132-202ENST00000356542 894 ntAPPRIS ALT2 TSL 2 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 FAM197Y1-201ENST00000421178 764 ntBASIC15.86■□□□□ 0.13
NKX3-1Q99801 FAM86C2P-201ENST00000525180 435 ntTSL 4 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 CFL2-205ENST00000555765 632 ntTSL 2 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 RPS15-203ENST00000586096 570 ntTSL 2 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 RBBP7-203ENST00000380087 2333 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 RNPS1-203ENST00000397086 2069 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
NKX3-1Q99801 AL109659.2-201ENST00000606809 1674 ntBASIC15.86■□□□□ 0.13
NKX3-1Q99801 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 ELMOD1-202ENST00000443271 1990 ntAPPRIS P1 TSL 2 BASIC15.86■□□□□ 0.13
NKX3-1Q99801 TOX2-205ENST00000423191 1709 ntTSL 2 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 EFHC1-206ENST00000635760 2030 ntTSL 5 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 ADIRF-AS1-201ENST00000418273 2627 ntTSL 3 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 KDELC1-201ENST00000376004 2060 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 AL645608.8-201ENST00000606034 2086 ntBASIC15.85■□□□□ 0.13
NKX3-1Q99801 JMJD4-207ENST00000620518 2432 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 STXBP3-201ENST00000370008 2478 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 MXD4-201ENST00000337190 4056 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 UXT-201ENST00000333119 574 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 FDX2-206ENST00000492239 773 ntTSL 2 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 CCDC62-201ENST00000253079 3546 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 IGSF8-201ENST00000314485 2343 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 SLCO6A1-202ENST00000389019 2340 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 GPD2-201ENST00000310454 6041 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 SMN2-202ENST00000380742 1388 ntAPPRIS ALT2 TSL 5 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 SIDT2-217ENST00000532062 2143 ntTSL 2 BASIC15.85■□□□□ 0.13
NKX3-1Q99801 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
NKX3-1Q99801 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 SH2D2A-201ENST00000368198 1599 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 SLC27A5-207ENST00000601355 1987 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 BFSP1-201ENST00000377868 2063 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
NKX3-1Q99801 KIAA1522-201ENST00000294521 878 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 POLR2D-202ENST00000409698 806 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC15.84■□□□□ 0.13
NKX3-1Q99801 ELP6-205ENST00000439305 880 ntTSL 2 BASIC15.84■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 26 ms