Protein–RNA interactions for Protein: Q96SZ6

CDK5RAP1, CDK5 regulatory subunit-associated protein 1, humanhuman

Known RBP Predictions only

Length 601 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP1Q96SZ6 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 CKLF-202ENST00000345436 571 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 IGHV3-47-201ENST00000425060 335 ntBASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 EFCAB11-211ENST00000556609 568 ntTSL 3 BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 CAMKK2-207ENST00000404169 2116 ntAPPRIS P4 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 XYLT2-203ENST00000507602 2107 ntTSL 2 BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.8■□□□□ 0.6
CDK5RAP1Q96SZ6 TJP1-208ENST00000495972 2890 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 MSC-201ENST00000325509 2023 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 AC022898.2-201ENST00000616822 1312 ntBASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 EMB-204ENST00000508934 1617 ntAPPRIS ALT2 TSL 5 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 SMAD7-201ENST00000262158 3087 ntAPPRIS P3 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 PHGDH-209ENST00000641074 1780 ntBASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 INS-201ENST00000250971 503 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 MRPL43-203ENST00000318364 1010 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 MRPL43-204ENST00000342071 894 ntTSL 5 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 LINC00421-201ENST00000413833 1054 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 MINOS1P3-201ENST00000457048 203 ntBASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 CDV3-207ENST00000508481 661 ntTSL 3 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 NOL12-207ENST00000611699 903 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 SMIM20-205ENST00000614775 1190 ntTSL 5 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 AC005258.1-201ENST00000621615 1268 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 VGLL4-210ENST00000426568 1428 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 AC069544.2-201ENST00000640019 2528 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 IRF7-207ENST00000525445 1588 ntTSL 5 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 PTRH1-204ENST00000419060 2692 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 IL4I1-201ENST00000341114 2349 ntAPPRIS P4 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 KRT9-201ENST00000246662 2290 ntAPPRIS P1 TSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 ADGRG2-210ENST00000379878 4803 ntTSL 1 (best) BASIC18.79■□□□□ 0.6
CDK5RAP1Q96SZ6 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 ISOC1-201ENST00000173527 1940 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 AGPAT5-201ENST00000285518 3685 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 SULT2B1-201ENST00000201586 1295 ntAPPRIS P4 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 HBZ-201ENST00000252951 755 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 PSCA-201ENST00000301258 1020 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 NPFFR2-202ENST00000344413 1234 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 MEF2B-202ENST00000409447 1297 ntTSL 3 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 POM121L3P-201ENST00000419331 1163 ntBASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 AL845331.1-201ENST00000424978 1190 ntBASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 COX18-204ENST00000507544 1086 ntAPPRIS ALT1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 ANKRD34C-AS1-203ENST00000559225 528 ntTSL 4 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 LINC01711-201ENST00000598340 967 ntBASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 EML2-AS1-203ENST00000623430 886 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 NSUN5P1-202ENST00000421140 1535 ntBASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 NSUN5P2-203ENST00000457352 1529 ntBASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 SERPINA4-201ENST00000298841 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC18.78■□□□□ 0.6
CDK5RAP1Q96SZ6 AC004832.3-202ENST00000439838 1470 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 PML-205ENST00000395132 1738 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 MAPK8IP3-202ENST00000356010 4456 ntTSL 5 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 MRPS34-201ENST00000177742 1040 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 ARMC12-202ENST00000373866 1254 ntAPPRIS P1 TSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 DANCR-204ENST00000444958 709 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 LINC00882-201ENST00000473636 710 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 PACRGL-218ENST00000507634 1142 ntTSL 5 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 SKP2-204ENST00000508514 821 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 PP7080-204ENST00000510714 601 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 DUTP2-201ENST00000519164 463 ntBASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 AC139749.1-201ENST00000534584 1094 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 AC013356.2-201ENST00000559730 729 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 AC111152.3-201ENST00000569699 673 ntBASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 FAM57A-205ENST00000572018 373 ntTSL 3 BASIC18.77■□□□□ 0.6
CDK5RAP1Q96SZ6 CYP1B1-AS1-214ENST00000620177 554 ntTSL 4 BASIC18.77■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms