Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 NAT14-202ENST00000587400 416 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 AC003005.1-201ENST00000601674 582 ntAPPRIS P5 TSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 AL023803.3-201ENST00000615559 522 ntBASIC13.63□□□□□ -0.23
LINC00477Q96M19 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 TTBK2-208ENST00000622375 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 ARFIP2-201ENST00000254584 2543 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 MARK2-207ENST00000502399 2885 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 ADARB1-202ENST00000360697 6604 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 MPP2-206ENST00000518766 1896 ntTSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 KDM6A-211ENST00000536777 5633 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 TMEM110-MUSTN1-202ENST00000504329 1405 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 JAM2-202ENST00000400532 1757 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC13.63□□□□□ -0.23
LINC00477Q96M19 HLA-DQB1-201ENST00000374943 1656 ntBASIC13.63□□□□□ -0.23
LINC00477Q96M19 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
LINC00477Q96M19 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 SPC24-206ENST00000592540 2315 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 KDM1A-202ENST00000400181 3059 ntAPPRIS ALT2 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 UNC93B2-201ENST00000285383 730 ntBASIC13.62□□□□□ -0.23
LINC00477Q96M19 PRORSD1P-201ENST00000295112 541 ntBASIC13.62□□□□□ -0.23
LINC00477Q96M19 GABRB1-201ENST00000295454 2143 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 CCDC107-202ENST00000378406 1016 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 POMC-202ENST00000380794 1295 ntAPPRIS P1 TSL 2 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 AL158047.1-201ENST00000445918 881 ntBASIC13.62□□□□□ -0.23
LINC00477Q96M19 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 WSCD1-209ENST00000574232 2129 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 AC215522.2-202ENST00000633163 1143 ntTSL 5 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 PANX1-201ENST00000227638 2769 ntAPPRIS P2 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 T-201ENST00000296946 2436 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 CROCCP1-201ENST00000426910 5675 ntBASIC13.62□□□□□ -0.23
LINC00477Q96M19 UNC13A-205ENST00000551649 6052 ntAPPRIS ALT2 TSL 5 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 ACSM2B-208ENST00000565322 1834 ntTSL 2 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 UROS-202ENST00000368778 1556 ntTSL 2 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 RBP4-202ENST00000371467 1314 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 AP001273.2-201ENST00000638767 2993 ntAPPRIS P1 TSL 5 BASIC13.62□□□□□ -0.23
LINC00477Q96M19 RECK-201ENST00000377966 4888 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC13.62□□□□□ -0.23
LINC00477Q96M19 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 MRGPRF-AS1-201ENST00000538407 1490 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 LINC00896-202ENST00000609602 2128 ntBASIC13.61□□□□□ -0.23
LINC00477Q96M19 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 SATB1-201ENST00000338745 7810 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 ADO-201ENST00000373783 3627 ntAPPRIS P1 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 ZNF22-201ENST00000298299 2551 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 AGER-205ENST00000375069 1538 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 KRT18P55-202ENST00000578578 1546 ntBASIC13.61□□□□□ -0.23
LINC00477Q96M19 GAS7-210ENST00000579158 1528 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 GALNT14-202ENST00000349752 2733 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 RAB40C-203ENST00000535977 2717 ntAPPRIS P1 TSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 DAB1-202ENST00000371230 1150 ntTSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 IL15RA-208ENST00000397251 1046 ntAPPRIS ALT2 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 GCSHP5-201ENST00000443090 522 ntBASIC13.61□□□□□ -0.23
LINC00477Q96M19 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 AP003041.3-201ENST00000527151 707 ntBASIC13.61□□□□□ -0.23
LINC00477Q96M19 BX088651.1-201ENST00000540551 451 ntBASIC13.61□□□□□ -0.23
LINC00477Q96M19 AC027796.4-201ENST00000575741 874 ntTSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 MIR4674-201ENST00000582457 87 ntBASIC13.61□□□□□ -0.23
LINC00477Q96M19 CD177-202ENST00000607855 536 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 TMEM132E-201ENST00000321639 5631 ntAPPRIS ALT2 TSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 GOLGA2P7-201ENST00000316967 2525 ntTSL 2 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 FSCN2-201ENST00000334850 1551 ntTSL 5 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 LHFPL6-201ENST00000379589 2110 ntAPPRIS P1 TSL 1 (best) BASIC13.61□□□□□ -0.23
LINC00477Q96M19 DDX31-201ENST00000310532 2408 ntTSL 2 BASIC13.61□□□□□ -0.23
LINC00477Q96M19 ZNF446-207ENST00000610298 1869 ntTSL 1 (best) BASIC13.61□□□□□ -0.23
Retrieved 100 of 98,524 protein–RNA pairs in 34.1 ms