Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 FRS3-201ENST00000259748 2094 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC17.41■□□□□ 0.38
VMP1Q96GC9 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
VMP1Q96GC9 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 RNH1-205ENST00000397615 2014 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 LINC02028-204ENST00000449350 1419 ntTSL 3 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 FAM213B-202ENST00000378425 2665 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 DAPK1-202ENST00000408954 5892 ntAPPRIS P1 TSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 MAPKAPK3-201ENST00000357955 2500 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 OXT-201ENST00000217386 513 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 TSPY5P-201ENST00000426936 936 ntBASIC17.4■□□□□ 0.38
VMP1Q96GC9 LINC01063-201ENST00000441644 348 ntTSL 3 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 MAP3K13-213ENST00000454237 526 ntTSL 3 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 MRPL46-202ENST00000558531 1002 ntTSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 NME3-204ENST00000563498 920 ntTSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 MED9-202ENST00000580462 565 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 BCL2L12-208ENST00000600947 633 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 AC011558.1-201ENST00000623459 338 ntBASIC17.4■□□□□ 0.38
VMP1Q96GC9 ZSCAN18-201ENST00000240727 2779 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 CLDND1-203ENST00000394181 2170 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 AGAP2-AS1-201ENST00000542466 1500 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 TCIRG1-201ENST00000265686 2677 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 RIN1-201ENST00000311320 2693 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 AC013275.1-201ENST00000413602 2019 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 GSDMD-206ENST00000526406 2496 ntAPPRIS P2 TSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 AC008556.1-201ENST00000610908 2040 ntBASIC17.4■□□□□ 0.38
VMP1Q96GC9 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
VMP1Q96GC9 TRPM4-213ENST00000599628 1829 ntTSL 2 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 CARHSP1-219ENST00000618335 2972 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
VMP1Q96GC9 PARS2-201ENST00000371279 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VMP1Q96GC9 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
VMP1Q96GC9 SHKBP1-201ENST00000291842 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
VMP1Q96GC9 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC17.39■□□□□ 0.38
VMP1Q96GC9 FBXW9-203ENST00000587955 1437 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
VMP1Q96GC9 SIKE1-201ENST00000060969 2190 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 ETNK2-202ENST00000367201 2431 ntAPPRIS ALT2 TSL 2 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 SLC47A1-202ENST00000395585 1998 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 HOXB3-205ENST00000470495 4208 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 SELENOF-203ENST00000401030 727 ntTSL 2 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 AC092647.4-201ENST00000457211 535 ntBASIC17.39■□□□□ 0.37
VMP1Q96GC9 AC063952.2-201ENST00000498792 1227 ntBASIC17.39■□□□□ 0.37
VMP1Q96GC9 AC022616.7-201ENST00000525383 220 ntBASIC17.39■□□□□ 0.37
VMP1Q96GC9 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 ATP5D-207ENST00000591660 637 ntAPPRIS P1 TSL 3 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 AC068587.9-201ENST00000641814 219 ntBASIC17.39■□□□□ 0.37
VMP1Q96GC9 AC141586.5-201ENST00000624546 2050 ntBASIC17.39■□□□□ 0.37
VMP1Q96GC9 MADD-208ENST00000405573 1823 ntTSL 5 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 GATB-213ENST00000515812 1893 ntTSL 5 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 JPT1-203ENST00000409753 1605 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 TAX1BP3-201ENST00000225525 1377 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
VMP1Q96GC9 AP2M1-201ENST00000292807 1931 ntAPPRIS P4 TSL 5 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 MATN4-201ENST00000353917 1657 ntTSL 5 BASIC17.39■□□□□ 0.37
VMP1Q96GC9 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 SHISA6-204ENST00000441885 7575 ntAPPRIS P3 TSL 5 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 MBD1-206ENST00000382948 2434 ntAPPRIS P3 TSL 2 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 TBX20-201ENST00000408931 1871 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 NUDT16-201ENST00000502852 1552 ntTSL 2 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 FUOM-201ENST00000278025 709 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 NUDT8-201ENST00000301490 809 ntAPPRIS P3 TSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 IMP3-202ENST00000403490 1237 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
VMP1Q96GC9 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
VMP1Q96GC9 EHMT1-211ENST00000482340 691 ntTSL 5 BASIC17.38■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 48.3 ms