Protein–RNA interactions for Protein: Q92994

BRF1, Transcription factor IIIB 90 kDa subunit, humanhuman

Predictions only

Length 677 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRF1Q92994 GNGT2-201ENST00000300406 889 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BRF1Q92994 ZMYM5-203ENST00000382907 1092 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BRF1Q92994 KIRREL3-AS3-201ENST00000404882 831 ntBASIC21.38■■□□□ 1.01
BRF1Q92994 PDCD6-206ENST00000507528 1088 ntAPPRIS ALT1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BRF1Q92994 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC21.38■■□□□ 1.01
BRF1Q92994 ELAC2-212ENST00000578071 579 ntTSL 4 BASIC21.38■■□□□ 1.01
BRF1Q92994 CENPX-206ENST00000580435 710 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BRF1Q92994 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.38■■□□□ 1.01
BRF1Q92994 SIGLEC6-203ENST00000359982 1811 ntAPPRIS ALT2 TSL 2 BASIC21.38■■□□□ 1.01
BRF1Q92994 TMEM132A-201ENST00000005286 3480 ntAPPRIS P3 TSL 5 BASIC21.38■■□□□ 1.01
BRF1Q92994 SQOR-201ENST00000260324 2003 ntAPPRIS P1 TSL 1 (best) BASIC21.38■■□□□ 1.01
BRF1Q92994 TMEM128-201ENST00000254742 1737 ntTSL 1 (best) BASIC21.38■■□□□ 1.01
BRF1Q92994 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC21.38■■□□□ 1.01
BRF1Q92994 EIF3B-201ENST00000360876 3055 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 ZNF655-203ENST00000357864 1370 ntTSL 2 BASIC21.37■■□□□ 1.01
BRF1Q92994 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC21.37■■□□□ 1.01
BRF1Q92994 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 STARP1-201ENST00000397973 869 ntBASIC21.37■■□□□ 1.01
BRF1Q92994 SNX5-210ENST00000481323 562 ntTSL 3 BASIC21.37■■□□□ 1.01
BRF1Q92994 TMEM64-204ENST00000519519 873 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 SLC52A2-205ENST00000526752 710 ntTSL 3 BASIC21.37■■□□□ 1.01
BRF1Q92994 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 NEK7-207ENST00000538004 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 GSTZ1-218ENST00000557053 580 ntTSL 3 BASIC21.37■■□□□ 1.01
BRF1Q92994 CADM1-222ENST00000616271 1246 ntTSL 5 BASIC21.37■■□□□ 1.01
BRF1Q92994 ZNF667-AS1-201ENST00000585445 1521 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
BRF1Q92994 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 AL391807.1-203ENST00000604392 2365 ntBASIC21.37■■□□□ 1.01
BRF1Q92994 KLHL33-202ENST00000636854 2394 ntAPPRIS P1 TSL 5 BASIC21.37■■□□□ 1.01
BRF1Q92994 TRIM8-201ENST00000302424 2831 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC21.37■■□□□ 1.01
BRF1Q92994 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC21.36■■□□□ 1.01
BRF1Q92994 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 AJUBA-202ENST00000361265 2569 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 RCN1P1-201ENST00000400413 996 ntBASIC21.36■■□□□ 1.01
BRF1Q92994 TSPY5P-201ENST00000426936 936 ntBASIC21.36■■□□□ 1.01
BRF1Q92994 AC104076.2-201ENST00000448912 469 ntBASIC21.36■■□□□ 1.01
BRF1Q92994 KRT18P38-201ENST00000449496 1282 ntBASIC21.36■■□□□ 1.01
BRF1Q92994 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC21.36■■□□□ 1.01
BRF1Q92994 MYD88-211ENST00000495303 976 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC21.36■■□□□ 1.01
BRF1Q92994 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 ARL16-209ENST00000573715 763 ntTSL 3 BASIC21.36■■□□□ 1.01
BRF1Q92994 ARL16-211ENST00000576135 694 ntTSL 3 BASIC21.36■■□□□ 1.01
BRF1Q92994 AC239803.1-201ENST00000594189 1278 ntTSL 5 BASIC21.36■■□□□ 1.01
BRF1Q92994 AL136038.4-201ENST00000603606 1261 ntBASIC21.36■■□□□ 1.01
BRF1Q92994 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC21.36■■□□□ 1.01
BRF1Q92994 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC21.36■■□□□ 1.01
BRF1Q92994 EIF4ENIF1-202ENST00000344710 3115 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC21.36■■□□□ 1.01
BRF1Q92994 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 MIR4300HG-201ENST00000500502 1397 ntTSL 1 (best) BASIC21.36■■□□□ 1.01
BRF1Q92994 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC21.35■■□□□ 1.01
BRF1Q92994 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC21.35■■□□□ 1.01
BRF1Q92994 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC21.35■■□□□ 1.01
BRF1Q92994 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 GATB-213ENST00000515812 1893 ntTSL 5 BASIC21.35■■□□□ 1.01
BRF1Q92994 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 ZFC3H1-211ENST00000552037 1484 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 PRICKLE4-202ENST00000394260 1035 ntAPPRIS ALT2 TSL 2 BASIC21.35■■□□□ 1.01
BRF1Q92994 PRICKLE4-203ENST00000394263 1155 ntAPPRIS P2 TSL 5 BASIC21.35■■□□□ 1.01
BRF1Q92994 RNF152P1-201ENST00000397754 604 ntBASIC21.35■■□□□ 1.01
BRF1Q92994 AK4P3-201ENST00000418260 669 ntBASIC21.35■■□□□ 1.01
BRF1Q92994 AC092597.1-201ENST00000487352 616 ntBASIC21.35■■□□□ 1.01
BRF1Q92994 RN7SL850P-201ENST00000579959 291 ntBASIC21.35■■□□□ 1.01
BRF1Q92994 TK1-205ENST00000590862 642 ntTSL 3 BASIC21.35■■□□□ 1.01
BRF1Q92994 C10orf142-201ENST00000619243 1110 ntAPPRIS P2 TSL 2 BASIC21.35■■□□□ 1.01
BRF1Q92994 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 BTNL9-202ENST00000376841 1626 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 CARD10-202ENST00000403299 4113 ntAPPRIS P1 TSL 5 BASIC21.35■■□□□ 1.01
BRF1Q92994 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 WDR45-205ENST00000376358 1432 ntTSL 2 BASIC21.35■■□□□ 1.01
BRF1Q92994 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC21.35■■□□□ 1.01
BRF1Q92994 KRCC1-201ENST00000347055 1753 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 PPT2-247ENST00000375143 1754 ntAPPRIS ALT2 TSL 5 BASIC21.35■■□□□ 1.01
BRF1Q92994 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC21.35■■□□□ 1.01
BRF1Q92994 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC21.35■■□□□ 1.01
BRF1Q92994 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC21.35■■□□□ 1.01
BRF1Q92994 ZMYM5-202ENST00000382905 1382 ntTSL 1 (best) BASIC21.35■■□□□ 1.01
BRF1Q92994 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC21.35■■□□□ 1.01
BRF1Q92994 DLGAP1-222ENST00000639615 1898 ntTSL 5 BASIC21.35■■□□□ 1.01
BRF1Q92994 SEPT9-236ENST00000591088 1691 ntAPPRIS ALT2 TSL 2 BASIC21.34■■□□□ 1.01
BRF1Q92994 AGPAT3-201ENST00000291572 5546 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
BRF1Q92994 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
Retrieved 100 of 98,524 protein–RNA pairs in 36.2 ms