Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 PPT1-210ENST00000530704 2340 ntTSL 1 (best)13.86□□□□□ -0.196e-7■■□□□ 14.3
UPF1Q92900 PPT1-213ENST00000641319 2388 ntBASIC13.39□□□□□ -0.276e-7■■□□□ 14.3
UPF1Q92900 PPT1-209ENST00000530076 1872 ntTSL 2 BASIC12.01□□□□□ -0.496e-7■■□□□ 14.3
UPF1Q92900 PPT1-219ENST00000642050 4010 ntAPPRIS P2 BASIC12□□□□□ -0.496e-7■■□□□ 14.3
UPF1Q92900 PPT1-211ENST00000641083 2353 nt10.96□□□□□ -0.666e-7■■□□□ 14.3
UPF1Q92900 QKI-204ENST00000361758 6085 ntTSL 522.41■■□□□ 1.184e-9■■□□□ 14.3
UPF1Q92900 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.544e-9■■□□□ 14.3
UPF1Q92900 RTN4-214ENST00000486085 955 ntTSL 313.67□□□□□ -0.221e-32■■□□□ 14.3
UPF1Q92900 SLC35B4-201ENST00000378509 6797 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.413e-6■■□□□ 14.3
UPF1Q92900 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.116e-7■■□□□ 14.3
UPF1Q92900 NT5C-202ENST00000577523 776 ntTSL 233.31■■■□□ 2.924e-7■■□□□ 14.3
UPF1Q92900 NT5C-213ENST00000583655 1315 ntTSL 231.38■■■□□ 2.614e-7■■□□□ 14.3
UPF1Q92900 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.614e-7■■□□□ 14.3
UPF1Q92900 NT5C-209ENST00000580758 958 ntTSL 227.58■■■□□ 2.014e-7■■□□□ 14.3
UPF1Q92900 NT5C-205ENST00000578407 720 ntTSL 326.54■■□□□ 1.844e-7■■□□□ 14.3
UPF1Q92900 NT5C-210ENST00000582160 860 ntTSL 2 BASIC25.71■■□□□ 1.714e-7■■□□□ 14.3
UPF1Q92900 NT5C-212ENST00000582744 921 ntTSL 223.9■■□□□ 1.424e-7■■□□□ 14.3
UPF1Q92900 NT5C-208ENST00000580423 450 ntTSL 223.75■■□□□ 1.394e-7■■□□□ 14.3
UPF1Q92900 DHTKD1-201ENST00000263035 5159 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.167e-7■■□□□ 14.3
UPF1Q92900 MED10-202ENST00000503112 925 ntTSL 220.75■□□□□ 0.912e-9■■□□□ 14.3
UPF1Q92900 PRKAB2-201ENST00000254101 5417 ntAPPRIS P1 TSL 1 (best) BASIC11.79□□□□□ -0.529e-7■■□□□ 14.3
UPF1Q92900 ZNF106-203ENST00000565380 5677 ntTSL 1 (best) BASIC10.57□□□□□ -0.725e-7■■□□□ 14.3
UPF1Q92900 ZNF106-204ENST00000565500 4733 ntTSL 1 (best)8.27□□□□□ -1.095e-7■■□□□ 14.3
UPF1Q92900 STARD7-204ENST00000479456 2949 ntTSL 28.7□□□□□ -1.022e-8■■□□□ 14.3
UPF1Q92900 CYCS-201ENST00000305786 4098 ntAPPRIS P1 TSL 1 (best) BASIC10.04□□□□□ -0.82e-11■■□□□ 14.3
UPF1Q92900 SEL1L-201ENST00000336735 7925 ntAPPRIS P1 TSL 1 (best) BASIC9.62□□□□□ -0.871e-6■■□□□ 14.3
UPF1Q92900 RPS10-NUDT3-201ENST00000605528 595 ntTSL 511.91□□□□□ -0.56e-11■■□□□ 14.3
UPF1Q92900 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.04■□□□□ 0.327e-9■■□□□ 14.3
UPF1Q92900 NAA50-210ENST00000616174 3257 ntTSL 2 BASIC11.71□□□□□ -0.537e-9■■□□□ 14.3
UPF1Q92900 TSPAN14-204ENST00000372157 855 ntTSL 528.52■■■□□ 2.162e-7■■□□□ 14.3
UPF1Q92900 MFNG-206ENST00000438891 966 ntTSL 223.65■■□□□ 1.382e-7■■□□□ 14.3
UPF1Q92900 HDAC5-206ENST00000587776 917 ntTSL 322.79■■□□□ 1.245e-6■■□□□ 14.3
UPF1Q92900 MFNG-203ENST00000424765 570 ntTSL 419.36■□□□□ 0.692e-7■■□□□ 14.3
UPF1Q92900 MFNG-204ENST00000430411 864 ntTSL 315.9■□□□□ 0.142e-7■■□□□ 14.3
UPF1Q92900 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC23.72■■□□□ 1.397e-11■■□□□ 14.3
UPF1Q92900 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.317e-11■■□□□ 14.3
UPF1Q92900 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.171e-6■■□□□ 14.3
UPF1Q92900 FARP2-223ENST00000627550 2122 ntTSL 2 BASIC23.08■■□□□ 1.282e-6■■□□□ 14.3
UPF1Q92900 FARP2-202ENST00000373287 2580 ntTSL 1 (best) BASIC18.07■□□□□ 0.482e-6■■□□□ 14.3
UPF1Q92900 FARP2-201ENST00000264042 4051 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.122e-6■■□□□ 14.3
UPF1Q92900 FARP2-204ENST00000413432 6065 ntTSL 212.84□□□□□ -0.352e-6■■□□□ 14.3
UPF1Q92900 ADD1-222ENST00000536424 594 ntTSL 523.88■■□□□ 1.416e-10■■□□□ 14.3
UPF1Q92900 ADD1-204ENST00000398123 2361 ntTSL 1 (best) BASIC17.63■□□□□ 0.416e-10■■□□□ 14.3
UPF1Q92900 SUPT4H1-206ENST00000581204 539 ntTSL 212.98□□□□□ -0.333e-10■■□□□ 14.3
UPF1Q92900 EAF1-203ENST00000617675 556 ntTSL 410.35□□□□□ -0.756e-7■■□□□ 14.3
UPF1Q92900 MORN4-201ENST00000307450 2315 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.281e-6■■□□□ 14.3
UPF1Q92900 MORN4-203ENST00000478953 2225 ntTSL 2 BASIC14.89□□□□□ -0.031e-6■■□□□ 14.3
UPF1Q92900 CPD-209ENST00000584221 680 ntTSL 310.52□□□□□ -0.735e-7■■□□□ 14.3
UPF1Q92900 SLC2A3-201ENST00000075120 3915 ntAPPRIS P1 TSL 1 (best) BASIC10.32□□□□□ -0.763e-7■■□□□ 14.3
UPF1Q92900 SLC2A3-205ENST00000486749 4414 ntTSL 1 (best)8.49□□□□□ -1.053e-7■■□□□ 14.3
UPF1Q92900 YRDC-201ENST00000373044 1826 ntAPPRIS P1 TSL 1 (best) BASIC28.85■■■□□ 2.211e-9■■□□□ 14.2
UPF1Q92900 DNAJB2-203ENST00000392087 823 ntTSL 543.8■■■■■ 4.62e-6■■□□□ 14.2
UPF1Q92900 RHOC-208ENST00000369642 1355 ntAPPRIS P1 TSL 1 (best) BASIC37.15■■■■□ 3.541e-10■■□□□ 14.2
UPF1Q92900 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC36.75■■■■□ 3.472e-6■■□□□ 14.2
UPF1Q92900 RHOC-202ENST00000339083 1418 ntAPPRIS P1 TSL 1 (best) BASIC35.8■■■■□ 3.321e-10■■□□□ 14.2
UPF1Q92900 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC29.78■■■□□ 2.362e-6■■□□□ 14.2
UPF1Q92900 PRSS21-208ENST00000575199 679 ntTSL 229.71■■■□□ 2.352e-6■■□□□ 14.2
UPF1Q92900 PRSS21-203ENST00000570594 809 ntTSL 328.11■■■□□ 2.092e-6■■□□□ 14.2
UPF1Q92900 RHOC-204ENST00000369633 1295 ntAPPRIS P1 TSL 3 BASIC28.02■■■□□ 2.081e-10■■□□□ 14.2
UPF1Q92900 ATF5-203ENST00000596658 722 ntTSL 225.57■■□□□ 1.682e-13■■□□□ 14.2
UPF1Q92900 PRSS21-210ENST00000577043 814 ntTSL 525.55■■□□□ 1.682e-6■■□□□ 14.2
UPF1Q92900 ATF5-204ENST00000597227 828 ntTSL 325.1■■□□□ 1.612e-13■■□□□ 14.2
UPF1Q92900 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC24.73■■□□□ 1.552e-6■■□□□ 14.2
UPF1Q92900 NDUFS7-207ENST00000538523 931 ntTSL 224.31■■□□□ 1.482e-6■■□□□ 14.2
UPF1Q92900 DNAJB2-205ENST00000425450 828 ntTSL 323.86■■□□□ 1.412e-6■■□□□ 14.2
UPF1Q92900 FLYWCH1-214ENST00000575679 757 ntTSL 322.51■■□□□ 1.192e-6■■□□□ 14.2
UPF1Q92900 NDUFS7-208ENST00000538662 1186 ntTSL 222.04■■□□□ 1.122e-6■■□□□ 14.2
UPF1Q92900 ATF5-205ENST00000600336 682 ntTSL 2 BASIC21.64■■□□□ 1.052e-13■■□□□ 14.2
UPF1Q92900 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.992e-6■■□□□ 14.2
UPF1Q92900 POFUT2-206ENST00000463917 441 ntTSL 320.09■□□□□ 0.812e-6■■□□□ 14.2
UPF1Q92900 DNAJB2-211ENST00000473750 971 ntTSL 219.95■□□□□ 0.782e-6■■□□□ 14.2
UPF1Q92900 PFKP-212ENST00000607886 432 ntTSL 519.27■□□□□ 0.682e-6■■□□□ 14.2
UPF1Q92900 PFKP-211ENST00000495715 143 ntTSL 318.46■□□□□ 0.552e-6■■□□□ 14.2
UPF1Q92900 RHOC-201ENST00000285735 2199 ntAPPRIS P1 TSL 2 BASIC18.43■□□□□ 0.541e-10■■□□□ 14.2
UPF1Q92900 FLYWCH1-212ENST00000574985 2318 ntTSL 218.3■□□□□ 0.522e-6■■□□□ 14.2
UPF1Q92900 SNAPC3-205ENST00000467062 2574 ntTSL 1 (best)18.05■□□□□ 0.482e-6■■□□□ 14.2
UPF1Q92900 FLYWCH1-201ENST00000253928 5037 ntAPPRIS ALT2 TSL 1 (best) BASIC17.9■□□□□ 0.462e-6■■□□□ 14.2
UPF1Q92900 FLYWCH1-202ENST00000344592 2565 ntTSL 1 (best)17.69■□□□□ 0.422e-6■■□□□ 14.2
UPF1Q92900 DNAJB2-212ENST00000476254 486 ntTSL 217.61■□□□□ 0.412e-6■■□□□ 14.2
UPF1Q92900 PRSS21-204ENST00000570629 626 ntTSL 217.22■□□□□ 0.352e-6■■□□□ 14.2
UPF1Q92900 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC17.11■□□□□ 0.332e-6■■□□□ 14.2
UPF1Q92900 SNAPC3-202ENST00000380821 5680 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.272e-6■■□□□ 14.2
UPF1Q92900 MRFAP1L1-201ENST00000320848 1593 ntAPPRIS P1 TSL 1 (best) BASIC16.72■□□□□ 0.272e-6■■□□□ 14.2
UPF1Q92900 KLHL26-201ENST00000300976 4407 ntAPPRIS P1 TSL 1 (best) BASIC16.08■□□□□ 0.162e-6■■□□□ 14.2
UPF1Q92900 PFKP-203ENST00000381125 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.072e-6■■□□□ 14.2
UPF1Q92900 NDUFS7-204ENST00000436115 2879 ntTSL 515.07■□□□□ 02e-6■■□□□ 14.2
UPF1Q92900 TERF2IP-202ENST00000564671 1266 ntTSL 214.93□□□□□ -0.022e-6■■□□□ 14.2
UPF1Q92900 DNAJB2-208ENST00000463463 807 ntTSL 314.71□□□□□ -0.052e-6■■□□□ 14.2
UPF1Q92900 MRFAP1L1-202ENST00000500563 2127 nt14.7□□□□□ -0.062e-6■■□□□ 14.2
UPF1Q92900 HMGB3-201ENST00000325307 3560 ntAPPRIS P2 TSL 1 (best) BASIC12.31□□□□□ -0.442e-6■■□□□ 14.2
UPF1Q92900 FLYWCH1-205ENST00000570752 3721 ntTSL 212.2□□□□□ -0.462e-6■■□□□ 14.2
UPF1Q92900 KIAA0040-201ENST00000423313 4564 ntAPPRIS P1 TSL 1 (best) BASIC10.03□□□□□ -0.82e-6■■□□□ 14.2
UPF1Q92900 SS18L1-201ENST00000331758 4493 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.822e-6■■□□□ 14.2
UPF1Q92900 KIAA0040-202ENST00000444639 4494 ntAPPRIS P1 TSL 1 (best) BASIC7.33□□□□□ -1.242e-6■■□□□ 14.2
UPF1Q92900 KIAA0040-206ENST00000619513 4340 ntTSL 2 BASIC7.06□□□□□ -1.282e-6■■□□□ 14.2
UPF1Q92900 TOMM40-205ENST00000589649 731 ntTSL 235.64■■■■□ 3.38e-7■■□□□ 14.2
UPF1Q92900 EHMT1-209ENST00000475704 756 ntTSL 230.79■■■□□ 2.528e-7■■□□□ 14.2
UPF1Q92900 BCAR1-213ENST00000563323 558 ntTSL 329.29■■■□□ 2.288e-7■■□□□ 14.2
UPF1Q92900 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC25.8■■□□□ 1.728e-7■■□□□ 14.2
UPF1Q92900 TMEM129-205ENST00000480360 761 ntTSL 324.73■■□□□ 1.558e-7■■□□□ 14.2
Retrieved 100 of 15,879 protein–RNA pairs in 100.8 ms