Protein–RNA interactions for Protein: Q8N998

CCDC89, Coiled-coil domain-containing protein 89, humanhuman

Predictions only

Length 374 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC89Q8N998 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC89Q8N998 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CCDC89Q8N998 RNF166-203ENST00000541206 2419 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 VHL-202ENST00000345392 2696 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 TPPP3-201ENST00000290942 1116 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 MIR149-201ENST00000384879 89 ntBASIC18.86■□□□□ 0.61
CCDC89Q8N998 TPPP3-202ENST00000393957 1058 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 TRIL-201ENST00000539664 4935 ntAPPRIS P1 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 NOL4L-211ENST00000621426 6577 ntAPPRIS P2 TSL 5 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 FXYD6-204ENST00000526014 2171 ntAPPRIS P2 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 USP13-201ENST00000263966 8323 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 SDHAP2-201ENST00000455183 2001 ntBASIC18.86■□□□□ 0.61
CCDC89Q8N998 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 ZYG11A-203ENST00000612017 3682 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
CCDC89Q8N998 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC18.86■□□□□ 0.61
CCDC89Q8N998 MYH14-202ENST00000376970 6787 ntAPPRIS ALT2 TSL 5 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 ZNF589-203ENST00000427617 1677 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC89Q8N998 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 PCDH7-206ENST00000543491 4457 ntAPPRIS ALT2 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 UNC93B2-201ENST00000285383 730 ntBASIC18.85■□□□□ 0.61
CCDC89Q8N998 ID1-202ENST00000376112 994 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC89Q8N998 DUSP15-205ENST00000398084 1256 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 SLC25A1P2-201ENST00000430693 912 ntBASIC18.85■□□□□ 0.61
CCDC89Q8N998 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 KRT18P23-201ENST00000435622 1283 ntBASIC18.85■□□□□ 0.61
CCDC89Q8N998 TSPY17P-201ENST00000450329 467 ntBASIC18.85■□□□□ 0.61
CCDC89Q8N998 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC89Q8N998 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 AC016737.2-201ENST00000609273 358 ntTSL 3 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 ZBTB16-201ENST00000335953 2523 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC89Q8N998 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 GRB7-202ENST00000394204 1667 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC89Q8N998 FAM110A-201ENST00000246100 1619 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC89Q8N998 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC18.85■□□□□ 0.61
CCDC89Q8N998 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC89Q8N998 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
CCDC89Q8N998 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 THUMPD2-204ENST00000505747 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 PLA2G4C-222ENST00000599921 1984 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 EML3-212ENST00000494176 2901 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 EML3-216ENST00000529309 2909 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 SLC35E2-201ENST00000246421 1430 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 KRT8P7-201ENST00000533003 1432 ntBASIC18.84■□□□□ 0.61
CCDC89Q8N998 HOXB1-202ENST00000577092 1414 ntBASIC18.84■□□□□ 0.61
CCDC89Q8N998 FAM53A-207ENST00000489363 2776 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 CFAP46-201ENST00000368585 1825 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 SLC47A2-202ENST00000350657 2285 ntAPPRIS ALT2 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 SYCE1L-201ENST00000378644 858 ntAPPRIS P2 TSL 5 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 AL162231.1-203ENST00000416454 465 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 AL390728.5-201ENST00000428687 706 ntTSL 3 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 PAIP2-208ENST00000511706 468 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 AP003041.3-201ENST00000527151 707 ntBASIC18.84■□□□□ 0.61
CCDC89Q8N998 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 USP36-216ENST00000589424 970 ntTSL 5 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 Z99916.2-201ENST00000604037 246 ntBASIC18.84■□□□□ 0.61
CCDC89Q8N998 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 FOLH1-204ENST00000356696 2403 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 VEGFA-206ENST00000372077 2834 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 GAREM2-202ENST00000407684 5138 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 UROS-202ENST00000368778 1556 ntTSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 PIF1-201ENST00000268043 2687 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 CXXC5-211ENST00000511048 1892 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
CCDC89Q8N998 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
CCDC89Q8N998 CTSA-204ENST00000372484 2149 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC89Q8N998 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC89Q8N998 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC89Q8N998 MRI1-201ENST00000040663 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC89Q8N998 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC89Q8N998 PTPN6-204ENST00000456013 2389 ntTSL 1 (best) BASIC18.83■□□□□ 0.61
CCDC89Q8N998 ENC1-205ENST00000510316 5381 ntTSL 2 BASIC18.83■□□□□ 0.61
CCDC89Q8N998 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC89Q8N998 BAALC-201ENST00000297574 801 ntTSL 3 BASIC18.83■□□□□ 0.6
CCDC89Q8N998 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
CCDC89Q8N998 AKIP1-206ENST00000525005 1128 ntTSL 2 BASIC18.83■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms