Protein–RNA interactions for Protein: Q7Z407

CSMD3, CUB and sushi domain-containing protein 3, humanhuman

Predictions only

Length 3,707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3Q7Z407 FEM1AP3-201ENST00000403722 1741 ntBASIC12.57□□□□□ -0.4
CSMD3Q7Z407 C7orf49-202ENST00000424142 1738 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 NDUFA12-201ENST00000327772 635 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AC034243.1-201ENST00000520838 587 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AC079776.2-201ENST00000641154 1609 ntBASIC12.57□□□□□ -0.4
CSMD3Q7Z407 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 C11orf80-203ENST00000525449 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 SNHG11-205ENST00000421599 1046 ntTSL 3 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AC008687.7-201ENST00000593309 920 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 TEAD2-210ENST00000601519 2167 ntAPPRIS ALT1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 KBTBD2-201ENST00000304056 3745 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AP000344.1-201ENST00000454268 641 ntTSL 5 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 AP000344.1-202ENST00000457193 586 ntTSL 4 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC12.57□□□□□ -0.4
CSMD3Q7Z407 STARD3-201ENST00000336308 2132 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 PDLIM7-201ENST00000355572 977 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 WDR53-203ENST00000429115 683 ntTSL 2 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 AC093028.1-201ENST00000622998 982 ntBASIC12.56□□□□□ -0.4
CSMD3Q7Z407 AP000867.4-201ENST00000641616 219 ntBASIC12.56□□□□□ -0.4
CSMD3Q7Z407 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 CWH43-201ENST00000226432 2472 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 USP39-201ENST00000323701 2177 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 LCE1D-201ENST00000326233 430 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 EXOSC8-202ENST00000389704 1198 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 GNB2-207ENST00000427895 1146 ntTSL 5 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 B4GALT1-AS1-202ENST00000442432 843 ntTSL 2 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 AC109322.1-201ENST00000524499 1264 ntBASIC12.56□□□□□ -0.4
CSMD3Q7Z407 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 AP002472.1-201ENST00000577490 586 ntBASIC12.56□□□□□ -0.4
CSMD3Q7Z407 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 AC064836.3-201ENST00000607928 673 ntBASIC12.56□□□□□ -0.4
CSMD3Q7Z407 AC009154.2-201ENST00000621177 724 ntBASIC12.56□□□□□ -0.4
CSMD3Q7Z407 SNAI3-AS1-205ENST00000568633 2096 ntBASIC12.56□□□□□ -0.4
CSMD3Q7Z407 LINC00602-201ENST00000629776 2065 ntBASIC12.56□□□□□ -0.4
CSMD3Q7Z407 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 SHF-201ENST00000290894 2500 ntAPPRIS P3 TSL 2 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 SLC25A47-201ENST00000361529 1738 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 PDP1-208ENST00000520728 2554 ntAPPRIS P3 TSL 1 (best) BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC12.56□□□□□ -0.4
CSMD3Q7Z407 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 GSAP-205ENST00000430584 600 ntTSL 5 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 AC132938.6-201ENST00000623828 1655 ntBASIC12.55□□□□□ -0.4
CSMD3Q7Z407 AP001476.1-201ENST00000451618 2198 ntTSL 2 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 NRG2-202ENST00000289422 2923 ntTSL 5 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 TRAPPC1-201ENST00000303731 811 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 TNNT3-203ENST00000381557 1019 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 SYS1-203ENST00000414310 795 ntTSL 3 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 CMTM3-205ENST00000562707 714 ntAPPRIS P1 TSL 3 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 LMO7-AS1-202ENST00000568735 467 ntTSL 3 BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 AC005829.1-201ENST00000570002 483 ntBASIC12.55□□□□□ -0.4
CSMD3Q7Z407 C2orf54-201ENST00000307486 2017 ntAPPRIS ALT2 TSL 1 (best) BASIC12.55□□□□□ -0.4
CSMD3Q7Z407 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC12.55□□□□□ -0.4
Retrieved 100 of 98,524 protein–RNA pairs in 36.4 ms