Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 WIPI1-202ENST00000546360 1575 ntTSL 2 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 OSR2-201ENST00000297565 1838 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 PHF12-205ENST00000577226 7679 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 C7orf49-209ENST00000483029 596 ntTSL 2 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 ETFA-216ENST00000560726 942 ntTSL 3 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 GPX4-207ENST00000589115 812 ntTSL 2 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 CLN6-221ENST00000637494 765 ntTSL 5 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 AC066615.1-201ENST00000640911 628 ntBASIC20■□□□□ 0.79
CCDC40Q4G0X9 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 IL17RC-206ENST00000416074 2342 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 YAP1-209ENST00000537274 5350 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 NUDT16L1-201ENST00000304301 1349 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
CCDC40Q4G0X9 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 ABO-203ENST00000611156 1577 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
CCDC40Q4G0X9 DAPK1-207ENST00000469640 5899 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 LINC01126-201ENST00000623515 1646 ntBASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 OPA3-202ENST00000323060 2250 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 PLEKHB1-203ENST00000398492 2275 ntAPPRIS ALT1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 STK4-201ENST00000372801 2038 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 ASL-204ENST00000395331 1538 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 CCK-201ENST00000334681 830 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 Telomerase-vert.1-201ENST00000363312 438 ntBASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 GAD2-202ENST00000376248 680 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 TMEM88B-201ENST00000378821 492 ntAPPRIS P1 TSL 2 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 RABL2A-202ENST00000393165 1118 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 SEC1P-202ENST00000473944 940 ntBASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 MFGE8-203ENST00000542878 1172 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 MAFF-201ENST00000338483 2490 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 TACSTD2-201ENST00000371225 2351 ntAPPRIS P1 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 KRT16P6-201ENST00000417510 1873 ntTSL 5 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC19.99■□□□□ 0.79
CCDC40Q4G0X9 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 CACNA1B-205ENST00000371363 9758 ntAPPRIS ALT2 TSL 5 BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 TRAF3IP1-201ENST00000373327 4279 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 CDX4-201ENST00000373514 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 ARNTL-201ENST00000389707 2776 ntAPPRIS P3 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 INPP5J-205ENST00000404390 2215 ntAPPRIS P3 TSL 2 BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 RPN2-201ENST00000237530 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 DGCR6L-201ENST00000248879 1154 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 FAM212A-201ENST00000333323 1040 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 AL161452.1-201ENST00000415062 1117 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 CHCHD6-204ENST00000508789 1159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 CMTM3-210ENST00000565666 769 ntTSL 3 BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 KLK7-206ENST00000597707 1054 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 POLI-207ENST00000579434 2705 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 GATA2-203ENST00000487848 1878 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 SLC2A8-202ENST00000373360 1937 ntTSL 1 (best) BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC19.98■□□□□ 0.79
CCDC40Q4G0X9 MOAP1-201ENST00000298894 2441 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 PSRC1-205ENST00000409138 1826 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 RAP1GDS1-201ENST00000264572 1686 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 PIGQ-203ENST00000321878 3006 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 SSNA1-201ENST00000322310 896 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 DHRS4L2-202ENST00000397071 1117 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 DCTN3-209ENST00000477738 713 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 TMA16-209ENST00000513272 803 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 LINC01024-205ENST00000521563 939 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 AC100793.2-201ENST00000593139 542 ntTSL 5 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 AC022154.1-201ENST00000600303 766 ntTSL 3 BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 OBP2B-205ENST00000618116 961 ntAPPRIS P1 TSL 1 (best) BASIC19.97■□□□□ 0.79
CCDC40Q4G0X9 AC120049.1-201ENST00000592638 2065 ntTSL 1 (best) BASIC19.97■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 53.9 ms