Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHD9Q3L8U1 AIRE-201ENST00000291582 2257 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.66
CHD9Q3L8U1 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 EEF1A1-203ENST00000331523 1923 ntAPPRIS P1 TSL 5 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 AC010460.3-201ENST00000511359 1579 ntBASIC19.14■□□□□ 0.65
CHD9Q3L8U1 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 ACADS-201ENST00000242592 1950 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 PAX4-204ENST00000463946 1613 ntTSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 MMP28-204ENST00000615136 2033 ntAPPRIS ALT2 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 AL391261.2-201ENST00000554907 773 ntTSL 2 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 NR5A1-204ENST00000620110 2975 ntTSL 5 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 LRRC36-201ENST00000329956 2395 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 IGLL3P-201ENST00000412472 434 ntBASIC19.14■□□□□ 0.65
CHD9Q3L8U1 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 AL359317.2-203ENST00000557409 538 ntTSL 4 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 CITED2-204ENST00000618718 901 ntTSL 2 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.14■□□□□ 0.65
CHD9Q3L8U1 SUFU-201ENST00000369899 1839 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 ADCK5-201ENST00000308860 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 AC132938.6-201ENST00000623828 1655 ntBASIC19.13■□□□□ 0.65
CHD9Q3L8U1 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 CEND1P1-201ENST00000451006 455 ntBASIC19.13■□□□□ 0.65
CHD9Q3L8U1 PRYP5-201ENST00000451909 266 ntBASIC19.13■□□□□ 0.65
CHD9Q3L8U1 RBM7-207ENST00000544582 692 ntTSL 3 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 AL035252.4-201ENST00000624174 288 ntBASIC19.13■□□□□ 0.65
CHD9Q3L8U1 PROK1-201ENST00000271331 1338 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 INTS11-250ENST00000620829 1862 ntTSL 2 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 SPDYE21P-201ENST00000413323 827 ntBASIC19.13■□□□□ 0.65
CHD9Q3L8U1 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 ITGA9-AS1-209ENST00000450990 562 ntTSL 4 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 RAMP2-205ENST00000589683 858 ntTSL 3 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 SAMD11-211ENST00000616125 2230 ntAPPRIS ALT2 TSL 5 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC19.13■□□□□ 0.65
CHD9Q3L8U1 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 AL512785.2-202ENST00000367932 830 ntTSL 4 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 AL391650.1-205ENST00000433939 579 ntAPPRIS P1 TSL 3 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 VN2R19P-201ENST00000442399 1052 ntBASIC19.12■□□□□ 0.65
CHD9Q3L8U1 ADORA1-209ENST00000640524 653 ntTSL 5 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 NADK2-206ENST00000506945 1437 ntTSL 2 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 EFEMP2-210ENST00000528176 1504 ntTSL 5 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 MRPL2-201ENST00000230413 899 ntTSL 2 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 AC055854.1-201ENST00000523627 570 ntTSL 4 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 KRT19P2-202ENST00000557173 1012 ntBASIC19.12■□□□□ 0.65
CHD9Q3L8U1 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 METTL23-205ENST00000588302 925 ntTSL 5 BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 AC009102.3-201ENST00000623118 1491 ntBASIC19.12■□□□□ 0.65
CHD9Q3L8U1 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 SNAI3-AS1-205ENST00000568633 2096 ntBASIC19.12■□□□□ 0.65
CHD9Q3L8U1 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CHD9Q3L8U1 MCU-201ENST00000357157 2874 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 ZEB1-AS1-206ENST00000606250 573 ntTSL 5 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 SLC25A41-201ENST00000321510 1532 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 GSX2-201ENST00000326902 1812 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 ARFGAP3-201ENST00000263245 2857 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 RGS19-202ENST00000395042 1593 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 GOSR2-201ENST00000225567 1245 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 KRT18P65-201ENST00000439811 1286 ntBASIC19.11■□□□□ 0.65
CHD9Q3L8U1 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC19.11■□□□□ 0.65
CHD9Q3L8U1 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC19.1■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms