Protein–RNA interactions for Protein: P84243

H3F3A, Histone H3.3, humanhuman

Predictions only

Length 136 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
H3F3AP84243 AP002807.1-202ENST00000526897 791 ntTSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 PPOX-214ENST00000535223 664 ntTSL 3 BASIC16.23■□□□□ 0.19
H3F3AP84243 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC16.23■□□□□ 0.19
H3F3AP84243 ISCU-208ENST00000539593 1071 ntTSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 IFI27L1-206ENST00000554562 571 ntTSL 3 BASIC16.23■□□□□ 0.19
H3F3AP84243 MRPL52-215ENST00000556840 398 ntTSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC16.23■□□□□ 0.19
H3F3AP84243 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC16.23■□□□□ 0.19
H3F3AP84243 NAA38-203ENST00000575071 553 ntTSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC16.23■□□□□ 0.19
H3F3AP84243 CD8A-202ENST00000352580 1977 ntAPPRIS ALT2 TSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 CHD1L-204ENST00000431239 2907 ntTSL 5 BASIC16.23■□□□□ 0.19
H3F3AP84243 EMX1-202ENST00000394111 1528 ntTSL 3 BASIC16.23■□□□□ 0.19
H3F3AP84243 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 SP100-208ENST00000427101 1922 ntTSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 SEPT2-208ENST00000407971 3267 ntTSL 5 BASIC16.23■□□□□ 0.19
H3F3AP84243 EMX2-201ENST00000442245 2710 ntTSL 2 BASIC16.23■□□□□ 0.19
H3F3AP84243 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC16.23■□□□□ 0.19
H3F3AP84243 MIDN-206ENST00000591446 3243 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
H3F3AP84243 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 MVK-201ENST00000228510 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 SPART-209ENST00000494062 3018 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 AC007192.1-201ENST00000593731 5142 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
H3F3AP84243 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 LINC00167-201ENST00000530583 1419 ntBASIC16.22■□□□□ 0.19
H3F3AP84243 LINC00461-203ENST00000504246 2300 ntTSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC16.22■□□□□ 0.19
H3F3AP84243 STAC3-201ENST00000332782 1656 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 MFSD2A-203ENST00000420632 1914 ntTSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.22■□□□□ 0.19
H3F3AP84243 SNCB-202ENST00000393693 1234 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 BX890604.1-205ENST00000425492 856 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 AC092159.3-201ENST00000439196 571 ntTSL 4 BASIC16.22■□□□□ 0.19
H3F3AP84243 AP003733.1-201ENST00000491725 852 ntBASIC16.22■□□□□ 0.19
H3F3AP84243 AC020558.2-201ENST00000582325 795 ntTSL 3 BASIC16.22■□□□□ 0.19
H3F3AP84243 AL445228.2-201ENST00000605589 952 ntBASIC16.22■□□□□ 0.19
H3F3AP84243 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 CLIP2-202ENST00000361545 5445 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 WNT8B-201ENST00000343737 2112 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 CCDC74B-202ENST00000392984 1353 ntAPPRIS ALT2 TSL 5 BASIC16.22■□□□□ 0.19
H3F3AP84243 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC16.22■□□□□ 0.19
H3F3AP84243 RRN3-205ENST00000563559 2128 ntTSL 5 BASIC16.22■□□□□ 0.19
H3F3AP84243 EMC8-201ENST00000253457 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 JKAMP-201ENST00000261247 1726 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
H3F3AP84243 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.22■□□□□ 0.19
H3F3AP84243 CACNA1A-225ENST00000636389 8137 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
H3F3AP84243 AL445433.2-201ENST00000425113 2544 ntTSL 2 BASIC16.21■□□□□ 0.19
H3F3AP84243 AL390961.4-201ENST00000623958 2535 ntBASIC16.21■□□□□ 0.19
H3F3AP84243 NSUN5-201ENST00000252594 1672 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 AC132938.6-201ENST00000623828 1655 ntBASIC16.21■□□□□ 0.19
H3F3AP84243 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.21■□□□□ 0.19
H3F3AP84243 PDE3B-201ENST00000282096 6076 ntAPPRIS P2 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 FAM219B-204ENST00000563119 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 CBS-203ENST00000398158 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 CBSL-206ENST00000624406 2453 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.21■□□□□ 0.19
H3F3AP84243 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 RAVER1-207ENST00000615032 1952 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
H3F3AP84243 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 EEF1D-202ENST00000395119 1249 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 AL645929.1-201ENST00000420084 975 ntBASIC16.21■□□□□ 0.19
H3F3AP84243 DMKN-212ENST00000443640 842 ntAPPRIS ALT2 TSL 5 BASIC16.21■□□□□ 0.19
H3F3AP84243 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC16.21■□□□□ 0.19
H3F3AP84243 PTK2-216ENST00000519881 863 ntTSL 3 BASIC16.21■□□□□ 0.19
H3F3AP84243 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC16.21■□□□□ 0.19
H3F3AP84243 AC092118.1-202ENST00000568697 718 ntTSL 3 BASIC16.21■□□□□ 0.19
H3F3AP84243 AC087388.1-201ENST00000571370 1112 ntBASIC16.21■□□□□ 0.19
H3F3AP84243 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.21■□□□□ 0.19
H3F3AP84243 WWOX-203ENST00000406884 1701 ntTSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 ZNF668-208ENST00000538906 2865 ntAPPRIS P1 TSL 2 BASIC16.21■□□□□ 0.19
H3F3AP84243 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 FDXR-205ENST00000544854 1827 ntTSL 2 BASIC16.21■□□□□ 0.19
H3F3AP84243 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC16.21■□□□□ 0.19
H3F3AP84243 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.21■□□□□ 0.18
H3F3AP84243 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC16.21■□□□□ 0.18
H3F3AP84243 REXO1L9P-201ENST00000604264 2108 ntBASIC16.21■□□□□ 0.18
H3F3AP84243 AL590648.2-201ENST00000427949 2225 ntTSL 2 BASIC16.21■□□□□ 0.18
H3F3AP84243 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC16.21■□□□□ 0.18
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms