Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 ACD-215ENST00000620761 1483 ntAPPRIS ALT2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN1P58418 GPR6-201ENST00000275169 1089 ntAPPRIS P1 BASIC16.25■□□□□ 0.19
CLRN1P58418 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN1P58418 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CLRN1P58418 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN1P58418 CR769775.1-204ENST00000439760 747 ntTSL 5 BASIC16.25■□□□□ 0.19
CLRN1P58418 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC16.25■□□□□ 0.19
CLRN1P58418 AC098829.1-201ENST00000502344 630 ntTSL 3 BASIC16.25■□□□□ 0.19
CLRN1P58418 AL132780.2-201ENST00000557615 1021 ntTSL 3 BASIC16.25■□□□□ 0.19
CLRN1P58418 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC16.25■□□□□ 0.19
CLRN1P58418 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN1P58418 MIR3917-201ENST00000580971 93 ntBASIC16.25■□□□□ 0.19
CLRN1P58418 C16orf74-207ENST00000602914 761 ntAPPRIS ALT2 TSL 2 BASIC16.25■□□□□ 0.19
CLRN1P58418 CYB561D2-210ENST00000607121 1004 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN1P58418 CAPN5-205ENST00000529629 2333 ntAPPRIS P1 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN1P58418 PHGDH-209ENST00000641074 1780 ntBASIC16.25■□□□□ 0.19
CLRN1P58418 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN1P58418 MSI2-203ENST00000416426 1714 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN1P58418 NOC2LP1-202ENST00000452600 2235 ntBASIC16.25■□□□□ 0.19
CLRN1P58418 DBN1-201ENST00000292385 3072 ntAPPRIS P4 TSL 1 (best) BASIC16.25■□□□□ 0.19
CLRN1P58418 FBXO44-201ENST00000251546 1896 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN1P58418 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC16.25■□□□□ 0.19
CLRN1P58418 DCAF17-211ENST00000539783 5623 ntAPPRIS ALT2 TSL 5 BASIC16.25■□□□□ 0.19
CLRN1P58418 HMGA1-205ENST00000447654 2159 ntAPPRIS P4 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 H1FNT-201ENST00000335017 1300 ntAPPRIS P1 BASIC16.24■□□□□ 0.19
CLRN1P58418 AL096828.2-201ENST00000567259 1965 ntBASIC16.24■□□□□ 0.19
CLRN1P58418 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 CD70-202ENST00000423145 881 ntTSL 2 BASIC16.24■□□□□ 0.19
CLRN1P58418 AL137013.1-201ENST00000432946 1228 ntBASIC16.24■□□□□ 0.19
CLRN1P58418 AC019068.1-202ENST00000483218 768 ntTSL 3 BASIC16.24■□□□□ 0.19
CLRN1P58418 AC034232.1-201ENST00000506026 1064 ntBASIC16.24■□□□□ 0.19
CLRN1P58418 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC16.24■□□□□ 0.19
CLRN1P58418 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC16.24■□□□□ 0.19
CLRN1P58418 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 RNF187-203ENST00000639044 708 ntAPPRIS P2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 VPS37B-201ENST00000267202 3028 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 GGT3P-201ENST00000412448 2340 ntTSL 2 BASIC16.24■□□□□ 0.19
CLRN1P58418 ZNF205-206ENST00000620094 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 PCCA-202ENST00000376285 2494 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 DACT2-201ENST00000366795 2942 ntAPPRIS P3 TSL 2 BASIC16.24■□□□□ 0.19
CLRN1P58418 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
CLRN1P58418 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.24■□□□□ 0.19
CLRN1P58418 ENTPD6-209ENST00000433259 2654 ntTSL 5 BASIC16.23■□□□□ 0.19
CLRN1P58418 KCMF1-201ENST00000409785 7568 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 PRRT2-212ENST00000636619 2065 ntTSL 5 BASIC16.23■□□□□ 0.19
CLRN1P58418 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 NSMAF-202ENST00000427130 3371 ntTSL 2 BASIC16.23■□□□□ 0.19
CLRN1P58418 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 C4orf50-202ENST00000531445 6860 ntAPPRIS P5 TSL 5 BASIC16.23■□□□□ 0.19
CLRN1P58418 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 ITGA7-201ENST00000257879 4120 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 BOLA3-202ENST00000327428 639 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 BAIAP2L2-202ENST00000381669 2146 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 ACTN4-202ENST00000390009 2102 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 AC113347.1-201ENST00000413321 391 ntBASIC16.23■□□□□ 0.19
CLRN1P58418 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC16.23■□□□□ 0.19
CLRN1P58418 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC16.23■□□□□ 0.19
CLRN1P58418 C12orf43-206ENST00000537817 1270 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 AC010203.1-204ENST00000548782 407 ntBASIC16.23■□□□□ 0.19
CLRN1P58418 AL138966.2-201ENST00000621997 464 ntBASIC16.23■□□□□ 0.19
CLRN1P58418 AL023973.1-201ENST00000624619 620 ntBASIC16.23■□□□□ 0.19
CLRN1P58418 TTLL3-209ENST00000426895 2767 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
CLRN1P58418 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC16.23■□□□□ 0.19
CLRN1P58418 MEST-201ENST00000223215 2465 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 MAP3K7CL-206ENST00000399928 1904 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 TBC1D3I-202ENST00000618620 1900 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
CLRN1P58418 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 GPATCH3-201ENST00000361720 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 FNBP1-201ENST00000355681 1977 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 AC020661.1-201ENST00000503052 1584 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 ARSI-203ENST00000515301 1429 ntTSL 4 BASIC16.22■□□□□ 0.19
CLRN1P58418 TSPAN3-201ENST00000267970 6467 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 PXK-206ENST00000463280 2825 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 PNLDC1-207ENST00000610273 1940 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 POMZP3-201ENST00000275569 1259 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 COMMD1-201ENST00000311832 911 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
CLRN1P58418 ANKRD20A18P-201ENST00000359341 492 ntBASIC16.22■□□□□ 0.19
CLRN1P58418 RNF144A-AS1-205ENST00000439208 757 ntTSL 3 BASIC16.22■□□□□ 0.19
CLRN1P58418 AL136307.1-201ENST00000454882 411 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 PLXND1-205ENST00000504689 546 ntTSL 3 BASIC16.22■□□□□ 0.19
CLRN1P58418 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC16.22■□□□□ 0.19
CLRN1P58418 REEP1-209ENST00000541910 969 ntTSL 2 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 38.6 ms