Protein–RNA interactions for Protein: P55347

PKNOX1, Homeobox protein PKNOX1, humanhuman

Predictions only

Length 436 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKNOX1P55347 MTMR14-203ENST00000353332 2368 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.44
PKNOX1P55347 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC17.83■□□□□ 0.44
PKNOX1P55347 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PKNOX1P55347 SYT17-207ENST00000568115 1721 ntTSL 5 BASIC17.83■□□□□ 0.44
PKNOX1P55347 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
PKNOX1P55347 DIAPH2-205ENST00000373061 4983 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
PKNOX1P55347 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
PKNOX1P55347 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 PPP1R7-202ENST00000272983 1954 ntTSL 2 BASIC17.82■□□□□ 0.44
PKNOX1P55347 SENP2-201ENST00000296257 5717 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 TMEM45B-201ENST00000281441 2234 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
PKNOX1P55347 PHGDH-209ENST00000641074 1780 ntBASIC17.82■□□□□ 0.44
PKNOX1P55347 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC17.82■□□□□ 0.44
PKNOX1P55347 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.82■□□□□ 0.44
PKNOX1P55347 HRAT92-201ENST00000452622 3506 ntTSL 2 BASIC17.82■□□□□ 0.44
PKNOX1P55347 PKD1P1-201ENST00000458669 6805 ntBASIC17.82■□□□□ 0.44
PKNOX1P55347 ACVR1C-203ENST00000348328 1270 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 MRPL53-202ENST00000409710 386 ntTSL 2 BASIC17.82■□□□□ 0.44
PKNOX1P55347 LINC01534-202ENST00000433232 554 ntTSL 3 BASIC17.82■□□□□ 0.44
PKNOX1P55347 TSPY17P-201ENST00000450329 467 ntBASIC17.82■□□□□ 0.44
PKNOX1P55347 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC17.82■□□□□ 0.44
PKNOX1P55347 KLHL26-205ENST00000599006 989 ntTSL 5 BASIC17.82■□□□□ 0.44
PKNOX1P55347 AL023803.3-201ENST00000615559 522 ntBASIC17.82■□□□□ 0.44
PKNOX1P55347 GHDC-202ENST00000414034 2496 ntTSL 2 BASIC17.82■□□□□ 0.44
PKNOX1P55347 SDHAP2-201ENST00000455183 2001 ntBASIC17.82■□□□□ 0.44
PKNOX1P55347 RGN-204ENST00000457380 2041 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 ZNF668-201ENST00000300849 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 TYRO3-201ENST00000263798 8207 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 AC012317.2-201ENST00000623305 2251 ntBASIC17.82■□□□□ 0.44
PKNOX1P55347 CAPN1-201ENST00000279247 3007 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 MED9-201ENST00000268711 2228 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 AC004890.2-202ENST00000463462 1494 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 IRF7-202ENST00000348655 1801 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 METTL9-201ENST00000358154 3256 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
PKNOX1P55347 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 SATB2-203ENST00000428695 2135 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 MCMBP-201ENST00000360003 4169 ntAPPRIS P3 TSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC17.81■□□□□ 0.44
PKNOX1P55347 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 SLBP-201ENST00000318386 1635 ntAPPRIS ALT1 TSL 3 BASIC17.81■□□□□ 0.44
PKNOX1P55347 CAMK2B-204ENST00000350811 2292 ntAPPRIS P4 TSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 PBX2-201ENST00000375050 3205 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 WDR74-201ENST00000278856 1289 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 MDFI-202ENST00000373050 809 ntTSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC17.81■□□□□ 0.44
PKNOX1P55347 AP003071.4-201ENST00000562276 1284 ntBASIC17.81■□□□□ 0.44
PKNOX1P55347 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC17.81■□□□□ 0.44
PKNOX1P55347 AL353719.1-201ENST00000566847 864 ntBASIC17.81■□□□□ 0.44
PKNOX1P55347 EPB41L3-207ENST00000545076 3190 ntAPPRIS ALT2 TSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 ENPP1-201ENST00000360971 7442 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 RBM17-201ENST00000379888 2755 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 PHRF1-205ENST00000533464 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 ERCC2-205ENST00000485403 1538 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 C17orf62-202ENST00000342572 1849 ntTSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 AL096870.2-201ENST00000565988 2108 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC17.81■□□□□ 0.44
PKNOX1P55347 SUPT20H-202ENST00000356185 2681 ntAPPRIS P3 TSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
PKNOX1P55347 BFSP1-205ENST00000536626 2075 ntTSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 AL645608.8-201ENST00000606034 2086 ntBASIC17.81■□□□□ 0.44
PKNOX1P55347 LRRC20-203ENST00000358141 2924 ntTSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 SLC23A3-207ENST00000455516 2048 ntTSL 2 BASIC17.81■□□□□ 0.44
PKNOX1P55347 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC17.81■□□□□ 0.44
PKNOX1P55347 TMSB4Y-201ENST00000284856 1669 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 EIF2B4-210ENST00000493344 1949 ntTSL 5 BASIC17.8■□□□□ 0.44
PKNOX1P55347 TMEM59L-201ENST00000262817 1613 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 MIEF2-204ENST00000395706 2441 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 CD14-201ENST00000302014 1886 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 PCDH7-201ENST00000361762 6403 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 DENND6B-201ENST00000413817 4939 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC17.8■□□□□ 0.44
PKNOX1P55347 GALNT17-201ENST00000333538 3884 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 AL445685.1-201ENST00000425802 762 ntTSL 3 BASIC17.8■□□□□ 0.44
PKNOX1P55347 KRT18P23-201ENST00000435622 1283 ntBASIC17.8■□□□□ 0.44
PKNOX1P55347 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC17.8■□□□□ 0.44
PKNOX1P55347 AP006621.4-201ENST00000527021 532 ntTSL 5 BASIC17.8■□□□□ 0.44
PKNOX1P55347 AC009065.1-201ENST00000564055 1225 ntBASIC17.8■□□□□ 0.44
PKNOX1P55347 WWOX-216ENST00000569818 525 ntBASIC17.8■□□□□ 0.44
PKNOX1P55347 AC004448.5-201ENST00000579897 567 ntTSL 5 BASIC17.8■□□□□ 0.44
PKNOX1P55347 ARHGDIA-207ENST00000580685 1201 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 NAT14-202ENST00000587400 416 ntTSL 5 BASIC17.8■□□□□ 0.44
PKNOX1P55347 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 MOCS2-202ENST00000396954 1785 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
PKNOX1P55347 NEU1-206ENST00000375631 2045 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
Retrieved 100 of 98,524 protein–RNA pairs in 70.9 ms