Protein–RNA interactions for Protein: P43307

SSR1, Translocon-associated protein subunit alpha, humanhuman

Known RBP Predictions only

Length 286 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSR1P43307 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
SSR1P43307 IL17RC-201ENST00000295981 2621 ntAPPRIS P4 TSL 2 BASIC19.33■□□□□ 0.68
SSR1P43307 SLC44A3-201ENST00000271227 2388 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSR1P43307 NETO1-201ENST00000327305 3058 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSR1P43307 SPNS3-201ENST00000355530 2133 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
SSR1P43307 REXO1L9P-201ENST00000604264 2108 ntBASIC19.33■□□□□ 0.68
SSR1P43307 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
SSR1P43307 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SSR1P43307 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SSR1P43307 TOR2A-205ENST00000463577 2211 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 PDZD8-201ENST00000334464 9699 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 NRBP1-203ENST00000379852 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC19.32■□□□□ 0.68
SSR1P43307 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.32■□□□□ 0.68
SSR1P43307 PTPRK-218ENST00000525459 1722 ntTSL 2 BASIC19.32■□□□□ 0.68
SSR1P43307 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 KRT18P23-201ENST00000435622 1283 ntBASIC19.32■□□□□ 0.68
SSR1P43307 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC19.32■□□□□ 0.68
SSR1P43307 AL451069.1-201ENST00000455414 634 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 CD209-209ENST00000601256 994 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 EBLN3P-205ENST00000629870 958 ntTSL 3 BASIC19.32■□□□□ 0.68
SSR1P43307 SEMA6D-205ENST00000389425 2318 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 C2CD2L-205ENST00000528586 2320 ntTSL 2 BASIC19.32■□□□□ 0.68
SSR1P43307 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC19.32■□□□□ 0.68
SSR1P43307 TJP3-205ENST00000587686 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 FLYWCH1P1-201ENST00000460917 1874 ntBASIC19.32■□□□□ 0.68
SSR1P43307 AC093677.2-201ENST00000600169 1863 ntBASIC19.32■□□□□ 0.68
SSR1P43307 NMRK1-203ENST00000376811 2050 ntTSL 2 BASIC19.32■□□□□ 0.68
SSR1P43307 FPGS-201ENST00000373225 2278 ntTSL 2 BASIC19.32■□□□□ 0.68
SSR1P43307 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 BMP2K-201ENST00000335016 3804 ntAPPRIS ALT2 TSL 5 BASIC19.32■□□□□ 0.68
SSR1P43307 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
SSR1P43307 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC19.31■□□□□ 0.68
SSR1P43307 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC19.31■□□□□ 0.68
SSR1P43307 TCP11-228ENST00000611141 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 MAFG-202ENST00000392366 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 ACTN4-201ENST00000252699 4963 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 ZZZ3-201ENST00000370798 2468 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 TRPV4-208ENST00000544971 2295 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 GSEC-201ENST00000626810 2289 ntTSL 2 BASIC19.31■□□□□ 0.68
SSR1P43307 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 CALHM2-201ENST00000260743 1859 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 TTLL9-205ENST00000375938 2623 ntAPPRIS P2 TSL 2 BASIC19.31■□□□□ 0.68
SSR1P43307 GUCA1A-201ENST00000053469 1874 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 SLC26A11-212ENST00000572725 1862 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC19.31■□□□□ 0.68
SSR1P43307 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC19.31■□□□□ 0.68
SSR1P43307 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 MBD1-208ENST00000398493 1845 ntTSL 5 BASIC19.31■□□□□ 0.68
SSR1P43307 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC19.31■□□□□ 0.68
SSR1P43307 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC19.31■□□□□ 0.68
SSR1P43307 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 AQP12B-201ENST00000407834 1094 ntAPPRIS P2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 DET1-205ENST00000558413 583 ntTSL 4 BASIC19.31■□□□□ 0.68
SSR1P43307 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC19.31■□□□□ 0.68
SSR1P43307 MIR4497-201ENST00000583208 89 ntBASIC19.31■□□□□ 0.68
SSR1P43307 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC19.31■□□□□ 0.68
SSR1P43307 CR769767.2-201ENST00000622735 460 ntBASIC19.31■□□□□ 0.68
SSR1P43307 EIF4G3-205ENST00000400422 5762 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 FCGBP-203ENST00000620799 4926 ntTSL 5 BASIC19.31■□□□□ 0.68
SSR1P43307 NAA35-201ENST00000361671 2649 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 RGL3-202ENST00000393423 2278 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 GMCL1P1-201ENST00000463439 1581 ntBASIC19.31■□□□□ 0.68
SSR1P43307 TMEM263-204ENST00000548125 3349 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
SSR1P43307 UBQLN4-201ENST00000368309 3576 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
SSR1P43307 STEAP1B-201ENST00000404369 1515 ntAPPRIS ALT2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSR1P43307 LRRC43-201ENST00000339777 2028 ntAPPRIS P2 TSL 5 BASIC19.3■□□□□ 0.68
SSR1P43307 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSR1P43307 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSR1P43307 NR1H2-202ENST00000411902 1466 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSR1P43307 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
SSR1P43307 TSPY15P-201ENST00000457163 923 ntBASIC19.3■□□□□ 0.68
SSR1P43307 SUSD3-205ENST00000617293 1076 ntAPPRIS ALT2 TSL 3 BASIC19.3■□□□□ 0.68
SSR1P43307 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC19.3■□□□□ 0.68
SSR1P43307 DUSP8-202ENST00000397374 4480 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSR1P43307 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC19.3■□□□□ 0.68
SSR1P43307 ATP2C1-218ENST00000510168 5067 ntAPPRIS ALT1 TSL 5 BASIC19.3■□□□□ 0.68
SSR1P43307 SCD5-201ENST00000273908 1995 ntTSL 2 BASIC19.3■□□□□ 0.68
SSR1P43307 NFIC-211ENST00000641145 8399 ntBASIC19.29■□□□□ 0.68
SSR1P43307 IGSF9-206ENST00000611023 2663 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SSR1P43307 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSR1P43307 CYP7B1-201ENST00000310193 2202 ntAPPRIS P1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSR1P43307 SPPL2C-201ENST00000329196 2238 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SSR1P43307 GRIA4-203ENST00000393127 5621 ntTSL 5 BASIC19.29■□□□□ 0.68
SSR1P43307 OGFOD2-205ENST00000454694 1488 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SSR1P43307 GSKIP-207ENST00000556095 3834 ntAPPRIS P1 TSL 2 BASIC19.29■□□□□ 0.68
SSR1P43307 NFATC4-202ENST00000413692 5700 ntAPPRIS ALT2 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSR1P43307 PANX1-202ENST00000436171 2750 ntAPPRIS ALT1 TSL 1 (best) BASIC19.29■□□□□ 0.68
SSR1P43307 MCCC1-215ENST00000629669 2316 ntTSL 5 BASIC19.29■□□□□ 0.68
SSR1P43307 SYT8-202ENST00000381968 1424 ntAPPRIS P2 TSL 5 BASIC19.29■□□□□ 0.68
SSR1P43307 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SSR1P43307 SNCG-201ENST00000348795 684 ntTSL 2 BASIC19.29■□□□□ 0.68
SSR1P43307 TSTD1-202ENST00000368023 574 ntAPPRIS ALT2 TSL 2 BASIC19.29■□□□□ 0.68
SSR1P43307 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC19.29■□□□□ 0.68
SSR1P43307 SHBG-203ENST00000416273 1042 ntAPPRIS ALT2 TSL 3 BASIC19.29■□□□□ 0.68
SSR1P43307 AL357874.1-201ENST00000428948 574 ntTSL 1 (best) BASIC19.29■□□□□ 0.68
SSR1P43307 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC19.29■□□□□ 0.68
SSR1P43307 SHBG-215ENST00000575903 1196 ntTSL 3 BASIC19.29■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 38.9 ms