Protein–RNA interactions for Protein: P38398

BRCA1, Breast cancer type 1 susceptibility protein, humanhuman

Known RBP Predictions only

Length 1,863 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1P38398 AC004877.2-201ENST00000623941 599 ntBASIC21.96■■□□□ 1.11
BRCA1P38398 ENOPH1-202ENST00000505846 1689 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
BRCA1P38398 MTFR1L-202ENST00000374301 2099 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BRCA1P38398 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC21.96■■□□□ 1.11
BRCA1P38398 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
BRCA1P38398 HSPB9-201ENST00000565659 1922 ntAPPRIS P1 BASIC21.96■■□□□ 1.11
BRCA1P38398 ALG3-201ENST00000397676 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
BRCA1P38398 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
BRCA1P38398 PIGQ-209ENST00000470411 2112 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
BRCA1P38398 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.95■■□□□ 1.1
BRCA1P38398 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BRCA1P38398 LINC01105-206ENST00000456327 1434 ntTSL 5 BASIC21.95■■□□□ 1.1
BRCA1P38398 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BRCA1P38398 MRPL23-201ENST00000381514 919 ntTSL 3 BASIC21.95■■□□□ 1.1
BRCA1P38398 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC21.95■■□□□ 1.1
BRCA1P38398 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC21.95■■□□□ 1.1
BRCA1P38398 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC21.95■■□□□ 1.1
BRCA1P38398 BLACE-201ENST00000378120 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BRCA1P38398 PRR22-202ENST00000419421 1392 ntAPPRIS P1 TSL 2 BASIC21.95■■□□□ 1.1
BRCA1P38398 AL353593.2-201ENST00000602529 1483 ntBASIC21.95■■□□□ 1.1
BRCA1P38398 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
BRCA1P38398 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC21.95■■□□□ 1.1
BRCA1P38398 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC21.95■■□□□ 1.1
BRCA1P38398 FAM50B-201ENST00000380272 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 DHRS2-201ENST00000250383 1705 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 IFT20-202ENST00000357896 974 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC21.94■■□□□ 1.1
BRCA1P38398 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 AC087641.1-201ENST00000557561 1021 ntBASIC21.94■■□□□ 1.1
BRCA1P38398 AL390955.2-201ENST00000603032 514 ntBASIC21.94■■□□□ 1.1
BRCA1P38398 C15orf56-202ENST00000623360 2129 ntTSL 2 BASIC21.94■■□□□ 1.1
BRCA1P38398 GIPR-201ENST00000263281 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC21.94■■□□□ 1.1
BRCA1P38398 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC21.94■■□□□ 1.1
BRCA1P38398 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 OARD1-202ENST00000424266 1337 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
BRCA1P38398 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
BRCA1P38398 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC21.94■■□□□ 1.1
BRCA1P38398 BAD-202ENST00000394531 631 ntTSL 3 BASIC21.94■■□□□ 1.1
BRCA1P38398 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC21.94■■□□□ 1.1
BRCA1P38398 FAM153C-206ENST00000507848 1071 ntAPPRIS ALT2 TSL 2 BASIC21.94■■□□□ 1.1
BRCA1P38398 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC21.94■■□□□ 1.1
BRCA1P38398 OAZ1-202ENST00000582888 969 ntAPPRIS ALT1 TSL 5 BASIC21.94■■□□□ 1.1
BRCA1P38398 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC21.94■■□□□ 1.1
BRCA1P38398 AP5S1-201ENST00000246041 1960 ntAPPRIS P1 TSL 4 BASIC21.94■■□□□ 1.1
BRCA1P38398 POLI-202ENST00000406285 2030 ntTSL 2 BASIC21.93■■□□□ 1.1
BRCA1P38398 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
BRCA1P38398 AC011473.4-202ENST00000250366 1602 ntAPPRIS P5 TSL 2 BASIC21.93■■□□□ 1.1
BRCA1P38398 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRCA1P38398 EXO5-202ENST00000358527 1892 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRCA1P38398 P3H4-202ENST00000393928 2601 ntAPPRIS P2 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRCA1P38398 CSNK1D-204ENST00000398519 1580 ntTSL 5 BASIC21.93■■□□□ 1.1
BRCA1P38398 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRCA1P38398 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC21.93■■□□□ 1.1
BRCA1P38398 DDIAS-202ENST00000524921 607 ntAPPRIS ALT2 TSL 4 BASIC21.93■■□□□ 1.1
BRCA1P38398 AC069262.1-201ENST00000539058 672 ntBASIC21.93■■□□□ 1.1
BRCA1P38398 AC099482.1-201ENST00000563471 481 ntTSL 2 BASIC21.93■■□□□ 1.1
BRCA1P38398 INO80C-206ENST00000586489 594 ntTSL 3 BASIC21.93■■□□□ 1.1
BRCA1P38398 AC006001.3-204ENST00000638711 2103 ntTSL 5 BASIC21.93■■□□□ 1.1
BRCA1P38398 HOXC10-201ENST00000303460 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
BRCA1P38398 AC125494.1-203ENST00000396799 1622 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
BRCA1P38398 ANKRD13D-201ENST00000308440 2219 ntTSL 2 BASIC21.93■■□□□ 1.1
BRCA1P38398 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
BRCA1P38398 SIGLEC8-202ENST00000340550 1293 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BRCA1P38398 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC21.92■■□□□ 1.1
BRCA1P38398 NKIRAS1-204ENST00000416026 795 ntAPPRIS P2 TSL 3 BASIC21.92■■□□□ 1.1
BRCA1P38398 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC21.92■■□□□ 1.1
BRCA1P38398 AC098484.3-202ENST00000603943 1011 ntAPPRIS P5 TSL 5 BASIC21.92■■□□□ 1.1
BRCA1P38398 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC21.92■■□□□ 1.1
BRCA1P38398 GRIFIN-202ENST00000614228 461 ntAPPRIS P1 TSL 5 BASIC21.92■■□□□ 1.1
BRCA1P38398 AC004790.2-201ENST00000623588 572 ntBASIC21.92■■□□□ 1.1
BRCA1P38398 HOXC4-201ENST00000303406 1524 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BRCA1P38398 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BRCA1P38398 MAP7D2-203ENST00000443379 2476 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
BRCA1P38398 AD000671.2-201ENST00000589807 1925 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
BRCA1P38398 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BRCA1P38398 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC21.92■■□□□ 1.1
BRCA1P38398 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
BRCA1P38398 NGEF-202ENST00000373552 2286 ntAPPRIS P1 TSL 2 BASIC21.92■■□□□ 1.1
BRCA1P38398 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
BRCA1P38398 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC21.92■■□□□ 1.1
BRCA1P38398 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC21.92■■□□□ 1.1
BRCA1P38398 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
BRCA1P38398 ACTG1P14-201ENST00000446382 1122 ntBASIC21.92■■□□□ 1.1
BRCA1P38398 AC093214.1-201ENST00000511688 1107 ntBASIC21.92■■□□□ 1.1
BRCA1P38398 AQP6-203ENST00000551733 849 ntTSL 3 BASIC21.92■■□□□ 1.1
BRCA1P38398 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC21.92■■□□□ 1.1
BRCA1P38398 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC21.92■■□□□ 1.1
BRCA1P38398 C2orf81-201ENST00000290390 2227 ntAPPRIS P5 TSL 5 BASIC21.91■■□□□ 1.1
BRCA1P38398 LINC00271-201ENST00000421378 1580 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.91■■□□□ 1.1
BRCA1P38398 ESM1-201ENST00000381403 1326 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.91■■□□□ 1.1
BRCA1P38398 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 OSM-201ENST00000215781 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.91■■□□□ 1.1
BRCA1P38398 GCAT-201ENST00000248924 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms