Protein–RNA interactions for Protein: P35244

RPA3, Replication protein A 14 kDa subunit, humanhuman

Predicted RBP Predictions only

Length 121 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPA3P35244 PSTPIP1-201ENST00000379595 1840 ntAPPRIS ALT1 TSL 5 BASIC18.37■□□□□ 0.53
RPA3P35244 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 STX11-201ENST00000367568 1926 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 GINM1-201ENST00000367419 2024 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 WT1-201ENST00000332351 3122 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 DNAJB2-201ENST00000336576 3176 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 NME9-203ENST00000383180 2133 ntTSL 2 BASIC18.37■□□□□ 0.53
RPA3P35244 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC18.37■□□□□ 0.53
RPA3P35244 BANP-227ENST00000626016 2144 ntTSL 2 BASIC18.37■□□□□ 0.53
RPA3P35244 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 ERBB2-205ENST00000578199 2526 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 VCY1B-201ENST00000250823 550 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 VCY-201ENST00000250825 550 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 AP005242.2-201ENST00000580065 1175 ntBASIC18.37■□□□□ 0.53
RPA3P35244 LHX3-203ENST00000619587 2698 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 SLC25A3-211ENST00000548847 1369 ntTSL 5 BASIC18.37■□□□□ 0.53
RPA3P35244 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC18.37■□□□□ 0.53
RPA3P35244 AC006116.8-202ENST00000587620 1550 ntBASIC18.37■□□□□ 0.53
RPA3P35244 EN2-201ENST00000297375 3395 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 TMEM104-202ENST00000417024 1781 ntTSL 2 BASIC18.37■□□□□ 0.53
RPA3P35244 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 FAM69C-201ENST00000343998 3671 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
RPA3P35244 NRP1-204ENST00000374822 2213 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
RPA3P35244 SYNM-202ENST00000336292 7394 ntAPPRIS P4 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 FIGNL2-201ENST00000564840 4693 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
RPA3P35244 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 SPNS1-202ENST00000323081 2102 ntTSL 2 BASIC18.36■□□□□ 0.53
RPA3P35244 FAM118A-202ENST00000405673 1612 ntTSL 5 BASIC18.36■□□□□ 0.53
RPA3P35244 AL390955.1-201ENST00000428694 934 ntBASIC18.36■□□□□ 0.53
RPA3P35244 HOXD8-203ENST00000450510 1268 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 GMCL1P1-201ENST00000463439 1581 ntBASIC18.36■□□□□ 0.53
RPA3P35244 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.36■□□□□ 0.53
RPA3P35244 APBB1-210ENST00000530885 1626 ntTSL 2 BASIC18.36■□□□□ 0.53
RPA3P35244 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC18.36■□□□□ 0.53
RPA3P35244 CFL2-205ENST00000555765 632 ntTSL 2 BASIC18.36■□□□□ 0.53
RPA3P35244 FITM1-202ENST00000559294 800 ntBASIC18.36■□□□□ 0.53
RPA3P35244 NUBP2-206ENST00000565134 815 ntTSL 5 BASIC18.36■□□□□ 0.53
RPA3P35244 ZNF561-AS1-202ENST00000586614 568 ntTSL 5 BASIC18.36■□□□□ 0.53
RPA3P35244 WBP2-219ENST00000626827 1867 ntTSL 5 BASIC18.36■□□□□ 0.53
RPA3P35244 IFNL4-203ENST00000634680 1421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 PLBD2-201ENST00000280800 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 FLOT2-202ENST00000394908 2618 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 AC084018.2-201ENST00000613093 2607 ntBASIC18.36■□□□□ 0.53
RPA3P35244 PRKAR1B-204ENST00000406797 2553 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
RPA3P35244 ERMARD-210ENST00000588451 2146 ntTSL 5 BASIC18.35■□□□□ 0.53
RPA3P35244 PP7080-201ENST00000342584 1876 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 PDIA5-201ENST00000316218 1799 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 RNF2-201ENST00000367509 1677 ntTSL 2 BASIC18.35■□□□□ 0.53
RPA3P35244 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC18.35■□□□□ 0.53
RPA3P35244 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 TNIP1-208ENST00000520931 2680 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 PIN1-201ENST00000247970 997 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 COX5A-201ENST00000322347 1268 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC18.35■□□□□ 0.53
RPA3P35244 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.35■□□□□ 0.53
RPA3P35244 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 AL355987.4-201ENST00000415992 4244 ntTSL 2 BASIC18.35■□□□□ 0.53
RPA3P35244 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 JPH2-201ENST00000342272 1923 ntTSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC18.35■□□□□ 0.53
RPA3P35244 ZNF623-201ENST00000458270 2733 ntAPPRIS ALT2 TSL 1 (best) BASIC18.35■□□□□ 0.53
RPA3P35244 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC18.35■□□□□ 0.53
RPA3P35244 AC099343.3-201ENST00000605834 2503 ntBASIC18.34■□□□□ 0.53
RPA3P35244 CYP2W1-202ENST00000340150 2361 ntTSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 TAF1C-222ENST00000570117 2349 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC18.34■□□□□ 0.53
RPA3P35244 PAX7-201ENST00000375375 2260 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 CLCN2-204ENST00000434054 2897 ntAPPRIS ALT2 TSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 CYP2D6-201ENST00000359033 1433 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 KRT17-205ENST00000540235 1438 ntTSL 5 BASIC18.34■□□□□ 0.53
RPA3P35244 GAB3-203ENST00000424127 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 C18orf8-208ENST00000590868 2002 ntTSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 SYT15-205ENST00000503753 1331 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 SEMA6C-209ENST00000613223 1950 ntTSL 5 BASIC18.34■□□□□ 0.53
RPA3P35244 PDE4A-201ENST00000293683 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 CTNNBL1-201ENST00000361383 1925 ntAPPRIS P2 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 MMP23A-201ENST00000234610 1017 ntBASIC18.34■□□□□ 0.53
RPA3P35244 HCRT-201ENST00000293330 577 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 OR10H2-201ENST00000305899 1041 ntAPPRIS P1 BASIC18.34■□□□□ 0.53
RPA3P35244 ZFYVE1-202ENST00000394207 1183 ntTSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 COL11A2-204ENST00000395194 1194 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.34■□□□□ 0.53
RPA3P35244 AL050404.1-201ENST00000424566 802 ntTSL 2 BASIC18.34■□□□□ 0.53
RPA3P35244 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC18.34■□□□□ 0.53
RPA3P35244 TAPBP-236ENST00000456592 817 ntTSL 5 BASIC18.34■□□□□ 0.53
RPA3P35244 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC18.34■□□□□ 0.53
RPA3P35244 FAU-207ENST00000529639 847 ntAPPRIS P1 TSL 1 (best) BASIC18.34■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 92.3 ms