Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 FOSL1P1-201ENST00000511041 816 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD3P31249 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 AC008687.5-201ENST00000593746 558 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
HOXD3P31249 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 UBC-206ENST00000538617 1303 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD3P31249 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 Z83836.1-201ENST00000624605 1642 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ADK-206ENST00000541550 2222 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 WIZP1-201ENST00000531444 2299 ntBASIC14.03□□□□□ -0.16
HOXD3P31249 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 NUS1P1-201ENST00000446295 882 ntBASIC14.03□□□□□ -0.16
HOXD3P31249 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 TPSP2-201ENST00000561760 610 ntBASIC14.03□□□□□ -0.16
HOXD3P31249 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 AC091304.2-201ENST00000564639 760 ntBASIC14.03□□□□□ -0.16
HOXD3P31249 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.03□□□□□ -0.16
HOXD3P31249 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC14.02□□□□□ -0.16
HOXD3P31249 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
HOXD3P31249 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
HOXD3P31249 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
HOXD3P31249 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXD3P31249 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXD3P31249 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD3P31249 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 KRT17P6-201ENST00000453795 1220 ntBASIC14.02□□□□□ -0.17
HOXD3P31249 AC009078.2-202ENST00000463353 338 ntBASIC14.02□□□□□ -0.17
HOXD3P31249 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD3P31249 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD3P31249 LINC01711-201ENST00000598340 967 ntBASIC14.02□□□□□ -0.17
HOXD3P31249 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 AC138894.3-201ENST00000603787 634 ntBASIC14.02□□□□□ -0.17
HOXD3P31249 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 28.9 ms