Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC113382.1-201ENST00000500267 1253 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 FOSL1P1-201ENST00000511041 816 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 AC026471.3-201ENST00000565137 578 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD3P31249 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 AC008687.5-201ENST00000593746 558 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
HOXD3P31249 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 AZIN1-201ENST00000337198 4721 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 UBC-206ENST00000538617 1303 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC14.04□□□□□ -0.16
HOXD3P31249 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 AKR1A1-214ENST00000621846 1360 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
HOXD3P31249 Z83836.1-201ENST00000624605 1642 ntBASIC14.04□□□□□ -0.16
HOXD3P31249 AC060780.1-201ENST00000635600 1782 ntTSL 5 BASIC14.04□□□□□ -0.16
HOXD3P31249 ETS1-208ENST00000535549 4594 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 PDXK-219ENST00000621478 1967 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 NFATC4-228ENST00000556759 2025 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 FAM53A-205ENST00000472884 2086 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ADK-206ENST00000541550 2222 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 ALDH5A1-201ENST00000348925 2266 ntAPPRIS P4 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 WIZP1-201ENST00000531444 2299 ntBASIC14.03□□□□□ -0.16
HOXD3P31249 CDC42EP3-201ENST00000295324 5700 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ELANE-201ENST00000263621 920 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 NUS1P1-201ENST00000446295 882 ntBASIC14.03□□□□□ -0.16
HOXD3P31249 TTTY14-203ENST00000447937 920 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 ENDOV-202ENST00000517295 908 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 AC079031.1-201ENST00000542627 1035 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 CIB2-208ENST00000560618 804 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 TPSP2-201ENST00000561760 610 ntBASIC14.03□□□□□ -0.16
HOXD3P31249 MPI-205ENST00000562606 1052 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 AC091304.2-201ENST00000564639 760 ntBASIC14.03□□□□□ -0.16
HOXD3P31249 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 ZFPM1-205ENST00000569086 563 ntTSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC14.03□□□□□ -0.16
HOXD3P31249 CDK2AP1-207ENST00000618072 1144 ntTSL 3 BASIC14.03□□□□□ -0.16
HOXD3P31249 USF2-202ENST00000343550 1523 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 GSDMD-201ENST00000262580 1762 ntAPPRIS P2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ZNF394-203ENST00000426306 2017 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 THAP3-203ENST00000377627 2053 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 KLF6-204ENST00000469435 2169 ntTSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 IFRD2-204ENST00000436390 2275 ntAPPRIS P1 TSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 SH3BP2-202ENST00000435136 2318 ntAPPRIS P3 TSL 2 BASIC14.03□□□□□ -0.16
HOXD3P31249 SYN2-206ENST00000621198 2674 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC14.03□□□□□ -0.16
HOXD3P31249 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 SLC6A7-203ENST00000524041 2431 ntTSL 5 BASIC14.02□□□□□ -0.16
HOXD3P31249 MSLN-207ENST00000566549 2418 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 TCAIM-203ENST00000396078 2178 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 MYC-201ENST00000259523 2042 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 CDC25B-202ENST00000340833 1978 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 RNF167-205ENST00000571816 1728 ntAPPRIS P3 TSL 5 BASIC14.02□□□□□ -0.16
HOXD3P31249 EHMT1-203ENST00000460843 5137 ntAPPRIS P2 TSL 5 BASIC14.02□□□□□ -0.16
HOXD3P31249 GLCCI1-201ENST00000223145 4743 ntAPPRIS P2 TSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 LINC00311-201ENST00000366314 1566 ntTSL 1 (best) BASIC14.02□□□□□ -0.16
HOXD3P31249 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.16
HOXD3P31249 CLEC4G-201ENST00000328853 1360 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 SEPT9-211ENST00000585930 1387 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXD3P31249 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 DGUOK-201ENST00000264093 1144 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 DGUOK-202ENST00000348222 880 ntTSL 2 BASIC14.02□□□□□ -0.17
HOXD3P31249 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 LINC01770-202ENST00000430109 510 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD3P31249 AL591212.1-201ENST00000433646 615 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 AC004975.2-201ENST00000442017 565 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 KRT17P6-201ENST00000453795 1220 ntBASIC14.02□□□□□ -0.17
HOXD3P31249 AC009078.2-202ENST00000463353 338 ntBASIC14.02□□□□□ -0.17
HOXD3P31249 KLK12-205ENST00000529888 735 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 TEN1-204ENST00000588202 862 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD3P31249 TK1-205ENST00000590862 642 ntTSL 3 BASIC14.02□□□□□ -0.17
HOXD3P31249 LINC01711-201ENST00000598340 967 ntBASIC14.02□□□□□ -0.17
HOXD3P31249 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 AC138894.3-201ENST00000603787 634 ntBASIC14.02□□□□□ -0.17
HOXD3P31249 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC14.02□□□□□ -0.17
HOXD3P31249 DGUOK-208ENST00000629438 1029 ntTSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
HOXD3P31249 LTBP3-217ENST00000530785 2461 ntTSL 2 BASIC14.02□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 11.2 ms