Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 AC005593.1-201ENST00000624894 515 ntBASIC21.7■■□□□ 1.06
COL4A5P29400 NEIL2-202ENST00000403422 2016 ntTSL 2 BASIC21.7■■□□□ 1.06
COL4A5P29400 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A5P29400 TRMT2A-203ENST00000404751 2498 ntAPPRIS ALT2 TSL 2 BASIC21.7■■□□□ 1.06
COL4A5P29400 CCT5-214ENST00000515676 1997 ntTSL 2 BASIC21.7■■□□□ 1.06
COL4A5P29400 REEP4-201ENST00000306306 1710 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A5P29400 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A5P29400 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A5P29400 AC006504.4-201ENST00000592118 1568 ntBASIC21.7■■□□□ 1.06
COL4A5P29400 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC21.7■■□□□ 1.06
COL4A5P29400 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
COL4A5P29400 VMO1-202ENST00000354194 651 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A5P29400 RFXANK-203ENST00000407360 1212 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A5P29400 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
COL4A5P29400 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC21.69■■□□□ 1.06
COL4A5P29400 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC21.69■■□□□ 1.06
COL4A5P29400 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC21.69■■□□□ 1.06
COL4A5P29400 ANKRD53-202ENST00000360589 1666 ntAPPRIS ALT2 TSL 2 BASIC21.69■■□□□ 1.06
COL4A5P29400 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC21.69■■□□□ 1.06
COL4A5P29400 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC21.69■■□□□ 1.06
COL4A5P29400 PRR14-203ENST00000542965 2316 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A5P29400 PYCR1-217ENST00000629768 1740 ntTSL 5 BASIC21.69■■□□□ 1.06
COL4A5P29400 SIT1-204ENST00000618781 1317 ntAPPRIS ALT2 TSL 5 BASIC21.69■■□□□ 1.06
COL4A5P29400 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
COL4A5P29400 DDIT4-AS1-201ENST00000491934 847 ntTSL 5 BASIC21.69■■□□□ 1.06
COL4A5P29400 PCDHGC4-204ENST00000618371 812 ntTSL 3 BASIC21.69■■□□□ 1.06
COL4A5P29400 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A5P29400 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 USP39-202ENST00000409025 1946 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A5P29400 MRM2-203ENST00000440306 1570 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
COL4A5P29400 LPAR3-201ENST00000370611 1720 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 AC093627.6-201ENST00000478759 1365 ntTSL 5 BASIC21.68■■□□□ 1.06
COL4A5P29400 EHMT1-204ENST00000462484 2707 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 PUF60-201ENST00000313352 1804 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 CHAC1-202ENST00000446533 1849 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 AIPL1-209ENST00000575265 2111 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
COL4A5P29400 AL035633.1-201ENST00000406139 838 ntBASIC21.68■■□□□ 1.06
COL4A5P29400 COPS7B-207ENST00000410024 1103 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
COL4A5P29400 IGLL3P-201ENST00000412472 434 ntBASIC21.68■■□□□ 1.06
COL4A5P29400 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC21.68■■□□□ 1.06
COL4A5P29400 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 AC016999.1-201ENST00000447880 452 ntTSL 3 BASIC21.68■■□□□ 1.06
COL4A5P29400 HCG4B-203ENST00000450128 991 ntBASIC21.68■■□□□ 1.06
COL4A5P29400 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC21.68■■□□□ 1.06
COL4A5P29400 CIPC-205ENST00000555437 566 ntTSL 3 BASIC21.68■■□□□ 1.06
COL4A5P29400 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC21.68■■□□□ 1.06
COL4A5P29400 ORC5-208ENST00000626700 344 ntTSL 3 BASIC21.68■■□□□ 1.06
COL4A5P29400 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
COL4A5P29400 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC21.68■■□□□ 1.06
COL4A5P29400 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC21.67■■□□□ 1.06
COL4A5P29400 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 LGALS7B-201ENST00000314980 483 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 TSPO-202ENST00000337554 881 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 OPN1LW-201ENST00000369951 1261 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 CNN2P11-201ENST00000429351 262 ntBASIC21.67■■□□□ 1.06
COL4A5P29400 TCAP-202ENST00000578283 583 ntTSL 5 BASIC21.67■■□□□ 1.06
COL4A5P29400 PGM5P2-202ENST00000637225 1043 ntBASIC21.67■■□□□ 1.06
COL4A5P29400 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC21.67■■□□□ 1.06
COL4A5P29400 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC21.67■■□□□ 1.06
COL4A5P29400 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 AOC1-202ENST00000416793 2453 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 FHL1-219ENST00000618438 2178 ntTSL 3 BASIC21.67■■□□□ 1.06
COL4A5P29400 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.67■■□□□ 1.06
COL4A5P29400 SIGLEC14-201ENST00000360844 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 AFG3L1P-217ENST00000557444 2447 ntBASIC21.67■■□□□ 1.06
COL4A5P29400 TUBA3FP-202ENST00000422086 1974 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
COL4A5P29400 RBFOX1-222ENST00000585867 1580 ntTSL 2 BASIC21.67■■□□□ 1.06
COL4A5P29400 PHF19-201ENST00000312189 836 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A5P29400 MFSD13A-202ENST00000369931 823 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A5P29400 CD9-202ENST00000382515 1229 ntTSL 5 BASIC21.66■■□□□ 1.06
COL4A5P29400 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC21.66■■□□□ 1.06
COL4A5P29400 AC096633.1-201ENST00000422446 749 ntBASIC21.66■■□□□ 1.06
COL4A5P29400 AL162231.1-204ENST00000423809 477 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
COL4A5P29400 GPR89P-201ENST00000407924 1495 ntBASIC21.66■■□□□ 1.06
COL4A5P29400 SLC22A1-203ENST00000457470 1452 ntTSL 5 BASIC21.66■■□□□ 1.06
COL4A5P29400 AC027312.1-201ENST00000523591 1571 ntTSL 5 BASIC21.66■■□□□ 1.06
COL4A5P29400 PSPC1-206ENST00000619300 2013 ntAPPRIS P1 TSL 5 BASIC21.66■■□□□ 1.06
COL4A5P29400 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A5P29400 CCDC78-201ENST00000293889 1611 ntAPPRIS P2 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A5P29400 PFN4-201ENST00000313213 974 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A5P29400 ADARB2-201ENST00000381305 703 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A5P29400 RNASE10-202ENST00000430083 1172 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A5P29400 KNCN-203ENST00000481882 1037 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
COL4A5P29400 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC21.66■■□□□ 1.06
COL4A5P29400 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC21.66■■□□□ 1.06
COL4A5P29400 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
COL4A5P29400 HOXD8-204ENST00000544999 1235 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
COL4A5P29400 TMEM106C-214ENST00000550161 976 ntTSL 3 BASIC21.66■■□□□ 1.06
COL4A5P29400 AC092384.3-201ENST00000561980 531 ntTSL 4 BASIC21.66■■□□□ 1.06
COL4A5P29400 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC21.66■■□□□ 1.06
COL4A5P29400 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC21.66■■□□□ 1.06
COL4A5P29400 AC092902.2-205ENST00000622381 394 ntTSL 5 BASIC21.66■■□□□ 1.06
COL4A5P29400 C20orf181-201ENST00000623918 480 ntBASIC21.66■■□□□ 1.06
COL4A5P29400 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 29.2 ms