Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 TMPRSS5-212ENST00000545579 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL8A1P27658 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 HCN4-201ENST00000261917 7228 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 CD82-202ENST00000342935 967 ntTSL 5 BASIC15.81■□□□□ 0.12
COL8A1P27658 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 SFT2D1-201ENST00000361731 1079 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC15.81■□□□□ 0.12
COL8A1P27658 PLCG1-202ENST00000373271 7395 ntAPPRIS ALT1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 PDHA1-203ENST00000379805 734 ntTSL 2 BASIC15.81■□□□□ 0.12
COL8A1P27658 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL8A1P27658 C6orf226-201ENST00000408925 552 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COL8A1P27658 RAD51-203ENST00000423169 1611 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 AFG3L1P-209ENST00000429663 458 ntTSL 3 BASIC15.81■□□□□ 0.12
COL8A1P27658 TINCR-201ENST00000448587 3733 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 MEG3-211ENST00000452514 461 ntTSL 3 BASIC15.81■□□□□ 0.12
COL8A1P27658 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC15.81■□□□□ 0.12
COL8A1P27658 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 WFDC1-203ENST00000568638 1319 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL8A1P27658 PAQR4-204ENST00000574988 869 ntTSL 2 BASIC15.81■□□□□ 0.12
COL8A1P27658 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL8A1P27658 LCA10-201ENST00000618311 1392 ntTSL 2 BASIC15.81■□□□□ 0.12
COL8A1P27658 AC090340.1-201ENST00000620778 4980 ntBASIC15.81■□□□□ 0.12
COL8A1P27658 MIR1199-201ENST00000621445 119 ntBASIC15.81■□□□□ 0.12
COL8A1P27658 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC15.81■□□□□ 0.12
COL8A1P27658 AC107918.4-202ENST00000641623 219 ntBASIC15.81■□□□□ 0.12
COL8A1P27658 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL8A1P27658 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC15.81■□□□□ 0.12
COL8A1P27658 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL8A1P27658 AC073314.1-201ENST00000568729 2216 ntBASIC15.8■□□□□ 0.12
COL8A1P27658 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 CARD9-201ENST00000371732 2123 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 RASSF1-201ENST00000327761 1757 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 ABHD14B-202ENST00000361143 1636 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC15.8■□□□□ 0.12
COL8A1P27658 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC15.8■□□□□ 0.12
COL8A1P27658 CD99-204ENST00000381187 892 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 ROMO1-205ENST00000397416 288 ntAPPRIS P1 TSL 3 BASIC15.8■□□□□ 0.12
COL8A1P27658 COLEC11-207ENST00000404205 1062 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 AC005281.1-201ENST00000433040 911 ntTSL 5 BASIC15.8■□□□□ 0.12
COL8A1P27658 LEF1-AS1-201ENST00000436413 1045 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 BCRP1-201ENST00000444246 691 ntBASIC15.8■□□□□ 0.12
COL8A1P27658 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC15.8■□□□□ 0.12
COL8A1P27658 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC15.8■□□□□ 0.12
COL8A1P27658 PUDP-206ENST00000540122 825 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 RPS29-206ENST00000557111 488 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 COX5A-206ENST00000568783 571 ntTSL 3 BASIC15.8■□□□□ 0.12
COL8A1P27658 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC15.8■□□□□ 0.12
COL8A1P27658 ZNF324B-203ENST00000594214 564 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 AC093028.1-201ENST00000622998 982 ntBASIC15.8■□□□□ 0.12
COL8A1P27658 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC15.8■□□□□ 0.12
COL8A1P27658 PLEKHG5-212ENST00000537245 4794 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 UBXN11-201ENST00000314675 2254 ntAPPRIS ALT2 TSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 DOK7-206ENST00000515886 2263 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 TMEM109-202ENST00000536171 1959 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL8A1P27658 RGMB-AS1-201ENST00000498871 1903 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC15.8■□□□□ 0.12
COL8A1P27658 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 GNA14-201ENST00000341700 2482 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC15.79■□□□□ 0.12
COL8A1P27658 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 NOMO2-201ENST00000330537 4352 ntAPPRIS ALT2 TSL 5 BASIC15.79■□□□□ 0.12
COL8A1P27658 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 HMOX2-208ENST00000570646 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 RGS11-203ENST00000359740 1371 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
COL8A1P27658 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC15.79■□□□□ 0.12
COL8A1P27658 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC15.79■□□□□ 0.12
COL8A1P27658 MRPS18A-202ENST00000372133 1062 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC15.79■□□□□ 0.12
COL8A1P27658 ARRB2-203ENST00000381488 1236 ntTSL 2 BASIC15.79■□□□□ 0.12
COL8A1P27658 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC15.79■□□□□ 0.12
COL8A1P27658 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC15.79■□□□□ 0.12
COL8A1P27658 DDT-206ENST00000430101 573 ntTSL 2 BASIC15.79■□□□□ 0.12
COL8A1P27658 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC15.79■□□□□ 0.12
COL8A1P27658 AC092865.6-201ENST00000642101 219 ntBASIC15.79■□□□□ 0.12
COL8A1P27658 AC099343.3-201ENST00000605834 2503 ntBASIC15.79■□□□□ 0.12
COL8A1P27658 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC15.79■□□□□ 0.12
COL8A1P27658 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC15.79■□□□□ 0.12
COL8A1P27658 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.79■□□□□ 0.12
COL8A1P27658 AC007040.2-201ENST00000606025 4170 ntAPPRIS P1 TSL 5 BASIC15.79■□□□□ 0.12
COL8A1P27658 THOC3-208ENST00000513482 1796 ntTSL 1 (best) BASIC15.79■□□□□ 0.12
COL8A1P27658 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC15.79■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms