Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC18.62■□□□□ 0.57
COL9A1P20849 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 STN1-201ENST00000224950 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL9A1P20849 KRT8P50-201ENST00000562022 1438 ntBASIC18.62■□□□□ 0.57
COL9A1P20849 DNAJC28-203ENST00000402202 1480 ntAPPRIS P1 TSL 5 BASIC18.62■□□□□ 0.57
COL9A1P20849 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC18.62■□□□□ 0.57
COL9A1P20849 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 PRR23B-201ENST00000329447 1896 ntAPPRIS P1 BASIC18.62■□□□□ 0.57
COL9A1P20849 NDRG2-227ENST00000554143 1980 ntAPPRIS ALT1 TSL 2 BASIC18.62■□□□□ 0.57
COL9A1P20849 KCNN2-208ENST00000631899 2098 ntAPPRIS ALT2 TSL 5 BASIC18.62■□□□□ 0.57
COL9A1P20849 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 AC007952.6-201ENST00000573168 2673 ntBASIC18.62■□□□□ 0.57
COL9A1P20849 AC003957.1-201ENST00000625108 2673 ntBASIC18.62■□□□□ 0.57
COL9A1P20849 RELA-202ENST00000406246 2700 ntAPPRIS P3 TSL 1 (best) BASIC18.62■□□□□ 0.57
COL9A1P20849 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC18.61■□□□□ 0.57
COL9A1P20849 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL9A1P20849 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC18.61■□□□□ 0.57
COL9A1P20849 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC18.61■□□□□ 0.57
COL9A1P20849 CTBP2-202ENST00000334808 2130 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL9A1P20849 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC18.61■□□□□ 0.57
COL9A1P20849 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC18.61■□□□□ 0.57
COL9A1P20849 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC18.61■□□□□ 0.57
COL9A1P20849 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC18.61■□□□□ 0.57
COL9A1P20849 MTMR9LP-203ENST00000426597 1545 ntBASIC18.61■□□□□ 0.57
COL9A1P20849 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC18.61■□□□□ 0.57
COL9A1P20849 DHRS7-212ENST00000611054 1321 ntTSL 5 BASIC18.61■□□□□ 0.57
COL9A1P20849 DNAH14-205ENST00000366850 1103 ntTSL 5 BASIC18.61■□□□□ 0.57
COL9A1P20849 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC18.61■□□□□ 0.57
COL9A1P20849 PRICKLE2-AS1-203ENST00000476308 623 ntTSL 2 BASIC18.61■□□□□ 0.57
COL9A1P20849 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC18.61■□□□□ 0.57
COL9A1P20849 LINC01551-203ENST00000550266 455 ntTSL 3 BASIC18.61■□□□□ 0.57
COL9A1P20849 TK1-204ENST00000590430 683 ntTSL 3 BASIC18.61■□□□□ 0.57
COL9A1P20849 MALAT1-215ENST00000619449 794 ntTSL 3 BASIC18.61■□□□□ 0.57
COL9A1P20849 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.61■□□□□ 0.57
COL9A1P20849 CRTC1-204ENST00000601916 1834 ntTSL 5 BASIC18.6■□□□□ 0.57
COL9A1P20849 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 EGFL7-204ENST00000406555 1529 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 TRIM13-206ENST00000457662 1489 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 C18orf32-201ENST00000318240 1128 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
COL9A1P20849 CDC26-201ENST00000374206 872 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 C1QC-203ENST00000374640 1163 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 TFAMP1-201ENST00000412727 736 ntBASIC18.6■□□□□ 0.57
COL9A1P20849 RMDN1-202ENST00000430676 1106 ntTSL 2 BASIC18.6■□□□□ 0.57
COL9A1P20849 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC18.6■□□□□ 0.57
COL9A1P20849 RN7SL204P-201ENST00000582831 262 ntBASIC18.6■□□□□ 0.57
COL9A1P20849 GZMM-202ENST00000592501 941 ntTSL 3 BASIC18.6■□□□□ 0.57
COL9A1P20849 FAM66A-202ENST00000602658 546 ntTSL 5 BASIC18.6■□□□□ 0.57
COL9A1P20849 AC025062.2-201ENST00000605477 670 ntBASIC18.6■□□□□ 0.57
COL9A1P20849 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC18.6■□□□□ 0.57
COL9A1P20849 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.6■□□□□ 0.57
COL9A1P20849 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC18.6■□□□□ 0.57
COL9A1P20849 NFYC-AS1-201ENST00000606277 1687 ntBASIC18.6■□□□□ 0.57
COL9A1P20849 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
COL9A1P20849 NHLRC1-201ENST00000340650 2248 ntAPPRIS P1 BASIC18.59■□□□□ 0.57
COL9A1P20849 BAZ1A-202ENST00000360310 6010 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 AC093484.2-201ENST00000580996 2166 ntBASIC18.59■□□□□ 0.57
COL9A1P20849 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 CTBP2-205ENST00000411419 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 MYEOV-202ENST00000441339 1996 ntAPPRIS P3 TSL 2 BASIC18.59■□□□□ 0.57
COL9A1P20849 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC18.59■□□□□ 0.57
COL9A1P20849 CALM1-216ENST00000626705 1341 ntTSL 5 BASIC18.59■□□□□ 0.57
COL9A1P20849 WDR88-202ENST00000361680 1835 ntAPPRIS ALT2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 CD320-201ENST00000301458 1250 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 NDUFB2-208ENST00000471136 499 ntTSL 3 BASIC18.59■□□□□ 0.57
COL9A1P20849 AL450267.1-201ENST00000557174 520 ntTSL 5 BASIC18.59■□□□□ 0.57
COL9A1P20849 AC092865.6-201ENST00000642101 219 ntBASIC18.59■□□□□ 0.57
COL9A1P20849 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC18.59■□□□□ 0.57
COL9A1P20849 NFKBIZ-201ENST00000326151 2058 ntTSL 2 BASIC18.59■□□□□ 0.57
COL9A1P20849 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC18.59■□□□□ 0.57
COL9A1P20849 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
COL9A1P20849 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
COL9A1P20849 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
COL9A1P20849 FBXO25-203ENST00000352684 2360 ntTSL 5 BASIC18.59■□□□□ 0.57
COL9A1P20849 GPX3-209ENST00000614343 1478 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL9A1P20849 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL9A1P20849 BMS1P4-202ENST00000584747 1716 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
COL9A1P20849 AC097374.2-201ENST00000618617 1306 ntBASIC18.58■□□□□ 0.57
COL9A1P20849 LYPD3-201ENST00000244333 1694 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
COL9A1P20849 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC18.58■□□□□ 0.56
COL9A1P20849 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.56
COL9A1P20849 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC18.58■□□□□ 0.56
COL9A1P20849 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC18.58■□□□□ 0.56
COL9A1P20849 COX11-202ENST00000571584 1108 ntTSL 2 BASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 37.4 ms