Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 SP100-208ENST00000427101 1922 ntTSL 2 BASIC28.15■■■□□ 2.1
PCF11O94913 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC28.15■■■□□ 2.1
PCF11O94913 CLDN14-205ENST00000399139 1231 ntAPPRIS P1 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCF11O94913 AC096633.1-201ENST00000422446 749 ntBASIC28.15■■■□□ 2.1
PCF11O94913 AC098831.1-202ENST00000438821 336 ntBASIC28.15■■■□□ 2.1
PCF11O94913 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC28.15■■■□□ 2.1
PCF11O94913 AC009567.1-201ENST00000515071 525 ntTSL 4 BASIC28.15■■■□□ 2.1
PCF11O94913 MTHFSD-203ENST00000543303 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCF11O94913 AL442663.3-201ENST00000554737 1000 ntTSL 3 BASIC28.15■■■□□ 2.1
PCF11O94913 GAK-222ENST00000618573 1248 ntTSL 1 (best) BASIC28.15■■■□□ 2.1
PCF11O94913 MTHFSD-220ENST00000634347 1207 ntAPPRIS P3 TSL 1 (best) BASIC28.15■■■□□ 2.1
PCF11O94913 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC28.15■■■□□ 2.1
PCF11O94913 PGM1-205ENST00000540265 2345 ntTSL 2 BASIC28.15■■■□□ 2.1
PCF11O94913 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC28.14■■■□□ 2.1
PCF11O94913 DUOXA1-201ENST00000267803 1996 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
PCF11O94913 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCF11O94913 AL355315.1-201ENST00000370649 1848 ntAPPRIS P1 TSL 2 BASIC28.14■■■□□ 2.1
PCF11O94913 TMUB2-213ENST00000589856 1505 ntTSL 2 BASIC28.14■■■□□ 2.1
PCF11O94913 C16orf70-208ENST00000569600 1353 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCF11O94913 DNAAF4-202ENST00000348518 1897 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.1
PCF11O94913 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC28.14■■■□□ 2.1
PCF11O94913 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCF11O94913 S100A16-204ENST00000368706 1118 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCF11O94913 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC28.14■■■□□ 2.1
PCF11O94913 UBE2J2-204ENST00000400929 1057 ntTSL 3 BASIC28.14■■■□□ 2.1
PCF11O94913 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC28.14■■■□□ 2.1
PCF11O94913 AP001160.2-201ENST00000596071 487 ntBASIC28.14■■■□□ 2.1
PCF11O94913 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.1
PCF11O94913 PIANP-204ENST00000540656 2432 ntAPPRIS P3 TSL 2 BASIC28.14■■■□□ 2.09
PCF11O94913 HIC1-201ENST00000322941 3053 ntAPPRIS P1 TSL 5 BASIC28.14■■■□□ 2.09
PCF11O94913 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
PCF11O94913 NRN1-201ENST00000244766 1624 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
PCF11O94913 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
PCF11O94913 PRICKLE4-204ENST00000458694 1646 ntAPPRIS P2 TSL 5 BASIC28.14■■■□□ 2.09
PCF11O94913 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC28.14■■■□□ 2.09
PCF11O94913 PEX14-201ENST00000356607 1985 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
PCF11O94913 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC28.14■■■□□ 2.09
PCF11O94913 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC28.14■■■□□ 2.09
PCF11O94913 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 AMZ2-203ENST00000392720 1378 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 MB21D1-202ENST00000370318 1917 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC28.13■■■□□ 2.09
PCF11O94913 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC28.13■■■□□ 2.09
PCF11O94913 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC28.13■■■□□ 2.09
PCF11O94913 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC28.13■■■□□ 2.09
PCF11O94913 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC28.13■■■□□ 2.09
PCF11O94913 RNF151-202ENST00000569210 853 ntTSL 2 BASIC28.13■■■□□ 2.09
PCF11O94913 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 PLIN5-201ENST00000381848 2470 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC28.13■■■□□ 2.09
PCF11O94913 ACHE-205ENST00000419336 1906 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 RNF212-202ENST00000382968 2335 ntAPPRIS P3 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 ATRIP-202ENST00000346691 2509 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 SYT15-201ENST00000374321 1369 ntAPPRIS P4 TSL 2 BASIC28.13■■■□□ 2.09
PCF11O94913 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 PARP16-202ENST00000444347 2352 ntTSL 2 BASIC28.13■■■□□ 2.09
PCF11O94913 KXD1-201ENST00000222307 1426 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 ABHD11-205ENST00000437775 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
PCF11O94913 REEP4-202ENST00000334530 1476 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 ADIPOR1-202ENST00000367254 1116 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC28.12■■■□□ 2.09
PCF11O94913 RAB17-203ENST00000409576 466 ntTSL 3 BASIC28.12■■■□□ 2.09
PCF11O94913 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 LINGO1-AS2-201ENST00000557799 663 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 LCE1E-203ENST00000619588 267 ntAPPRIS ALT2 TSL 5 BASIC28.12■■■□□ 2.09
PCF11O94913 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 IQCJ-SCHIP1-207ENST00000638749 2633 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 TMPRSS5-201ENST00000299882 2232 ntAPPRIS P3 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 HES1-201ENST00000232424 1578 ntAPPRIS P1 TSL 1 (best) BASIC28.12■■■□□ 2.09
PCF11O94913 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC28.12■■■□□ 2.09
PCF11O94913 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC28.11■■■□□ 2.09
PCF11O94913 GRTP1-205ENST00000620217 1073 ntTSL 2 BASIC28.11■■■□□ 2.09
PCF11O94913 DMWD-201ENST00000270223 3305 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 NUP50-AS1-201ENST00000426282 2076 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 GPANK1-204ENST00000375900 1814 ntAPPRIS P1 TSL 2 BASIC28.11■■■□□ 2.09
PCF11O94913 UBXN6-202ENST00000394765 1809 ntTSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 UMOD-203ENST00000396138 2399 ntAPPRIS ALT2 TSL 5 BASIC28.11■■■□□ 2.09
PCF11O94913 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 AC079776.2-201ENST00000641154 1609 ntBASIC28.11■■■□□ 2.09
PCF11O94913 UQCC3-201ENST00000377953 1947 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 AL356309.3-201ENST00000624132 1934 ntBASIC28.11■■■□□ 2.09
PCF11O94913 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 TMEM79-203ENST00000405535 2201 ntAPPRIS P1 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC28.11■■■□□ 2.09
PCF11O94913 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC28.11■■■□□ 2.09
PCF11O94913 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 HNRNPA1P28-201ENST00000424481 961 ntBASIC28.11■■■□□ 2.09
PCF11O94913 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC28.11■■■□□ 2.09
PCF11O94913 KLK12-203ENST00000525263 1077 ntAPPRIS ALT2 TSL 1 (best) BASIC28.11■■■□□ 2.09
PCF11O94913 AC135776.2-201ENST00000567803 714 ntTSL 4 BASIC28.11■■■□□ 2.09
PCF11O94913 AC008735.5-201ENST00000623544 497 ntBASIC28.11■■■□□ 2.09
PCF11O94913 AC073592.4-201ENST00000623827 446 ntBASIC28.11■■■□□ 2.09
PCF11O94913 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC28.1■■■□□ 2.09
PCF11O94913 POLD3-203ENST00000527458 2122 ntTSL 1 (best) BASIC28.1■■■□□ 2.09
PCF11O94913 RPL13P5-202ENST00000412023 1438 ntTSL 2 BASIC28.1■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 35.8 ms