Protein–RNA interactions for Protein: O60902

SHOX2, Short stature homeobox protein 2, humanhuman

Predicted RBP Predictions only

Length 331 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX2O60902 OLA1-201ENST00000284719 4417 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18.18■□□□□ 0.5
SHOX2O60902 ADCYAP1R1-203ENST00000409363 1889 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 PLEKHB1-202ENST00000354190 2380 ntAPPRIS P4 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 ZBTB33-201ENST00000326624 5211 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 RASA2-202ENST00000452898 2562 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 AC005329.1-201ENST00000501448 3571 ntTSL 2 BASIC18.18■□□□□ 0.5
SHOX2O60902 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.18■□□□□ 0.5
SHOX2O60902 ME3-201ENST00000323418 1068 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 GRTP1-201ENST00000326039 1294 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 ICAM4-202ENST00000380770 1211 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 NOXO1-203ENST00000397280 1147 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 AC093787.1-201ENST00000450396 207 ntBASIC18.18■□□□□ 0.5
SHOX2O60902 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC18.18■□□□□ 0.5
SHOX2O60902 AC005181.1-201ENST00000604782 1256 ntBASIC18.18■□□□□ 0.5
SHOX2O60902 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 MAZ-216ENST00000616501 991 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 SLC12A5-217ENST00000626937 1224 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.18■□□□□ 0.5
SHOX2O60902 ABHD3-209ENST00000580981 1836 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 ZMIZ1-205ENST00000611351 2196 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC18.18■□□□□ 0.5
SHOX2O60902 AC055811.2-201ENST00000427497 1693 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 TAB2-209ENST00000637181 4230 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC18.18■□□□□ 0.5
SHOX2O60902 NIFK-201ENST00000285814 1734 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
SHOX2O60902 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 C3orf58-201ENST00000315691 4346 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 SURF4-209ENST00000618229 3200 ntTSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 LINC00905-202ENST00000588117 1768 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 CORO6-212ENST00000584969 1416 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
SHOX2O60902 HCRTR1-203ENST00000403528 2003 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
SHOX2O60902 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.17■□□□□ 0.5
SHOX2O60902 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 BET1L-204ENST00000410108 637 ntTSL 3 BASIC18.17■□□□□ 0.5
SHOX2O60902 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC18.17■□□□□ 0.5
SHOX2O60902 POU5F1P3-201ENST00000428824 1078 ntBASIC18.17■□□□□ 0.5
SHOX2O60902 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 SMARCD3-202ENST00000356800 1669 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 GBA2-201ENST00000378088 1672 ntTSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 ARHGEF28-211ENST00000512883 2936 ntTSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC18.17■□□□□ 0.5
SHOX2O60902 PACRGL-203ENST00000444671 1720 ntTSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC18.17■□□□□ 0.5
SHOX2O60902 FKBP8-206ENST00000596558 1756 ntAPPRIS ALT1 TSL 2 BASIC18.17■□□□□ 0.5
SHOX2O60902 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
SHOX2O60902 LGALS9C-209ENST00000581545 1378 ntTSL 5 BASIC18.17■□□□□ 0.5
SHOX2O60902 CHST14-201ENST00000306243 3574 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
SHOX2O60902 WWP1-202ENST00000517970 4686 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 ESR2-205ENST00000358599 1899 ntTSL 2 BASIC18.16■□□□□ 0.5
SHOX2O60902 RNF121-203ENST00000393713 2132 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 CLDN15-202ENST00000401528 2131 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
SHOX2O60902 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC18.16■□□□□ 0.5
SHOX2O60902 ENDOV-225ENST00000522751 1475 ntTSL 5 BASIC18.16■□□□□ 0.5
SHOX2O60902 CA7-202ENST00000394069 1713 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 PITPNC1-201ENST00000299954 6359 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SHOX2O60902 AC007322.1-201ENST00000426983 750 ntBASIC18.16■□□□□ 0.5
SHOX2O60902 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC18.16■□□□□ 0.5
SHOX2O60902 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.16■□□□□ 0.5
SHOX2O60902 CSF1-204ENST00000369802 2484 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 CADPS2-202ENST00000334010 6045 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
SHOX2O60902 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
SHOX2O60902 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 GJA4-201ENST00000342280 1622 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 TVP23C-204ENST00000438826 1852 ntAPPRIS ALT1 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
SHOX2O60902 GPR161-202ENST00000367835 2400 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 ZNF764-202ENST00000395091 2970 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 CTSO-201ENST00000433477 2954 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.15■□□□□ 0.5
SHOX2O60902 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 PDX1-201ENST00000381033 2501 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 CYP2T1P-202ENST00000641596 2535 ntBASIC18.15■□□□□ 0.5
SHOX2O60902 MIB2-217ENST00000504599 3311 ntAPPRIS ALT2 TSL 2 BASIC18.15■□□□□ 0.5
SHOX2O60902 FBXO33-201ENST00000298097 3853 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
SHOX2O60902 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
SHOX2O60902 KCNE5-201ENST00000372101 1473 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 31.1 ms