Protein–RNA interactions for Protein: O15259

NPHP1, Nephrocystin-1, humanhuman

Predictions only

Length 732 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP1O15259 ARPC1B-201ENST00000252725 1551 ntAPPRIS P1 TSL 1 (best) BASIC22.84■■□□□ 1.25
NPHP1O15259 SNX19-209ENST00000530356 1562 ntTSL 2 BASIC22.84■■□□□ 1.25
NPHP1O15259 AHCYL1-203ENST00000393614 4313 ntTSL 2 BASIC22.84■■□□□ 1.25
NPHP1O15259 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 ARHGEF2-204ENST00000368315 1645 ntTSL 5 BASIC22.83■■□□□ 1.25
NPHP1O15259 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 P2RY6-201ENST00000349767 1700 ntAPPRIS P1 TSL 2 BASIC22.83■■□□□ 1.25
NPHP1O15259 ALG9-214ENST00000614444 2028 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 ATXN2-227ENST00000616825 4575 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
NPHP1O15259 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 TNNC1-201ENST00000232975 714 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 LAMTOR5-201ENST00000256644 868 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 MED16-201ENST00000269814 1199 ntTSL 5 BASIC22.83■■□□□ 1.25
NPHP1O15259 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC22.83■■□□□ 1.25
NPHP1O15259 FABP5-202ENST00000396359 986 ntTSL 5 BASIC22.83■■□□□ 1.25
NPHP1O15259 FOXD3-AS1-201ENST00000418244 941 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 LAT-205ENST00000454369 1262 ntAPPRIS ALT2 TSL 5 BASIC22.83■■□□□ 1.25
NPHP1O15259 LAMTOR5-204ENST00000483260 694 ntTSL 2 BASIC22.83■■□□□ 1.25
NPHP1O15259 AC113404.2-201ENST00000507884 177 ntBASIC22.83■■□□□ 1.25
NPHP1O15259 RNASEH2C-202ENST00000527610 835 ntTSL 2 BASIC22.83■■□□□ 1.25
NPHP1O15259 LAMTOR5-206ENST00000602318 634 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 FAM215A-202ENST00000632077 792 ntBASIC22.83■■□□□ 1.25
NPHP1O15259 WNT9B-201ENST00000290015 1376 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 UTP4-201ENST00000314423 2322 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 ILDR1-203ENST00000393631 1456 ntTSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC22.83■■□□□ 1.25
NPHP1O15259 CXorf58-201ENST00000379211 1752 ntAPPRIS P2 TSL 1 (best) BASIC22.83■■□□□ 1.24
NPHP1O15259 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC22.83■■□□□ 1.24
NPHP1O15259 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 ACTL6B-201ENST00000160382 1537 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 SEMA3C-201ENST00000265361 5174 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC22.82■■□□□ 1.24
NPHP1O15259 NDOR1-204ENST00000458322 1829 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 POLI-202ENST00000406285 2030 ntTSL 2 BASIC22.82■■□□□ 1.24
NPHP1O15259 GGT6-202ENST00000381550 2145 ntTSL 2 BASIC22.82■■□□□ 1.24
NPHP1O15259 HS3ST3A1-201ENST00000284110 2527 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC22.82■■□□□ 1.24
NPHP1O15259 TRIM47-201ENST00000254816 2266 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 LINC00937-205ENST00000538304 2157 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 ROCK2-209ENST00000616279 6401 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 NAPRT-203ENST00000435154 1877 ntTSL 2 BASIC22.82■■□□□ 1.24
NPHP1O15259 PAN3-AS1-201ENST00000563843 1351 ntBASIC22.82■■□□□ 1.24
NPHP1O15259 NUDT6-201ENST00000304430 1169 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC22.82■■□□□ 1.24
NPHP1O15259 FGFR3P6-201ENST00000457012 610 ntBASIC22.82■■□□□ 1.24
NPHP1O15259 KRT18P41-201ENST00000518924 1277 ntBASIC22.82■■□□□ 1.24
NPHP1O15259 TSPAN4-214ENST00000525201 834 ntTSL 5 BASIC22.82■■□□□ 1.24
NPHP1O15259 AC009533.2-201ENST00000543664 586 ntBASIC22.82■■□□□ 1.24
NPHP1O15259 RDH5-202ENST00000547072 1054 ntTSL 5 BASIC22.82■■□□□ 1.24
NPHP1O15259 SLC9A3R2-208ENST00000566198 1199 ntTSL 2 BASIC22.82■■□□□ 1.24
NPHP1O15259 PRSS8-206ENST00000568261 1214 ntTSL 2 BASIC22.82■■□□□ 1.24
NPHP1O15259 PIN1-206ENST00000587625 878 ntTSL 2 BASIC22.82■■□□□ 1.24
NPHP1O15259 AC005336.2-201ENST00000593183 939 ntBASIC22.82■■□□□ 1.24
NPHP1O15259 ANKMY2-206ENST00000628652 1270 ntTSL 5 BASIC22.82■■□□□ 1.24
NPHP1O15259 BAG5-201ENST00000299204 4848 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC22.82■■□□□ 1.24
NPHP1O15259 MTSS1-203ENST00000431961 1711 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC22.82■■□□□ 1.24
NPHP1O15259 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 MSL1-206ENST00000579565 1401 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 ZNF582-207ENST00000619584 2297 ntAPPRIS P1 TSL 1 (best) BASIC22.82■■□□□ 1.24
NPHP1O15259 PHF2-202ENST00000375376 3045 ntTSL 5 BASIC22.82■■□□□ 1.24
NPHP1O15259 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 ST8SIA5-202ENST00000536490 1499 ntTSL 2 BASIC22.81■■□□□ 1.24
NPHP1O15259 OCSTAMP-201ENST00000279028 2043 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 TUBA4A-202ENST00000392088 2499 ntTSL 2 BASIC22.81■■□□□ 1.24
NPHP1O15259 AC007952.1-201ENST00000399087 553 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 AC007952.2-202ENST00000399093 556 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC22.81■■□□□ 1.24
NPHP1O15259 RPL18-208ENST00000549920 1004 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 RPL18-209ENST00000550645 463 ntTSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 RPL18-214ENST00000552588 559 ntTSL 3 BASIC22.81■■□□□ 1.24
NPHP1O15259 AC021739.2-201ENST00000558375 964 ntTSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC22.81■■□□□ 1.24
NPHP1O15259 GZMM-202ENST00000592501 941 ntTSL 3 BASIC22.81■■□□□ 1.24
NPHP1O15259 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC22.81■■□□□ 1.24
NPHP1O15259 AC106017.2-202ENST00000628484 536 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC22.81■■□□□ 1.24
NPHP1O15259 AC009133.6-201ENST00000609618 2252 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 CNTNAP3-204ENST00000377656 4986 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 FA2H-201ENST00000219368 2424 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 TMEM191A-208ENST00000450925 1961 ntTSL 2 BASIC22.81■■□□□ 1.24
NPHP1O15259 HAUS8-202ENST00000448593 1545 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 MLST8-232ENST00000569417 1870 ntAPPRIS P3 TSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 TMEM25-225ENST00000533102 1410 ntTSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 CDKN2C-201ENST00000262662 2904 ntAPPRIS P1 TSL 2 BASIC22.81■■□□□ 1.24
NPHP1O15259 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 TSPAN32-201ENST00000182290 1318 ntAPPRIS P2 TSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 TSPAN32-217ENST00000612299 1301 ntTSL 5 BASIC22.81■■□□□ 1.24
NPHP1O15259 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC22.81■■□□□ 1.24
NPHP1O15259 DLGAP4-206ENST00000475894 3110 ntAPPRIS ALT2 TSL 2 BASIC22.8■■□□□ 1.24
NPHP1O15259 FAM99B-201ENST00000382166 1067 ntTSL 5 BASIC22.8■■□□□ 1.24
Retrieved 100 of 98,524 protein–RNA pairs in 59.4 ms