Protein–RNA interactions for Protein: Q9UN37

VPS4A, Vacuolar protein sorting-associated protein 4A, humanhuman

Predictions only

Length 437 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4AQ9UN37 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 AKIP1-207ENST00000529876 1421 ntTSL 2 BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 HTATSF1-204ENST00000535601 3019 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VPS4AQ9UN37 MXRA8-209ENST00000477278 2728 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 SELENOF-207ENST00000611507 1785 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 GPR42-201ENST00000454971 1804 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 DCST1-204ENST00000423025 2199 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 ASZ1-201ENST00000284629 1865 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 ACSM2A-201ENST00000219054 1988 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 ASNS-206ENST00000437628 1638 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 GYG2P1-201ENST00000357871 623 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 LINC00595-207ENST00000476909 792 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 CKBP1-201ENST00000565489 1086 ntBASIC17.63■□□□□ 0.41
VPS4AQ9UN37 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 CCDC106-206ENST00000591241 1153 ntTSL 3 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 ACBD4-215ENST00000592162 1684 ntTSL 5 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 GLIS1-201ENST00000312233 2812 ntAPPRIS P2 TSL 2 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 GLIS1-202ENST00000628545 2807 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 SMN1-209ENST00000514951 1308 ntTSL 2 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 CRELD2-201ENST00000328268 1357 ntAPPRIS P3 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 KRT8P45-201ENST00000414328 1447 ntBASIC17.63■□□□□ 0.41
VPS4AQ9UN37 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 CCDC91-220ENST00000545336 2738 ntAPPRIS P1 TSL 5 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 SAMD11-212ENST00000617307 2314 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 FGFR1-206ENST00000397091 5702 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
VPS4AQ9UN37 RCC2P3-201ENST00000418112 1537 ntBASIC17.62■□□□□ 0.41
VPS4AQ9UN37 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 TULP1-208ENST00000614066 2084 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 OGFOD3-202ENST00000329197 1652 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 RNFT2-202ENST00000319176 2180 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 RNFT2-209ENST00000622220 2176 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 GJA3-201ENST00000241125 5211 ntAPPRIS P1 TSL 3 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 RXFP4-201ENST00000368318 1240 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 DAP-202ENST00000432074 1048 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 AC007663.1-201ENST00000438948 1240 ntBASIC17.62■□□□□ 0.41
VPS4AQ9UN37 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 CIZ1-226ENST00000629610 2855 ntAPPRIS ALT2 TSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 TADA3-201ENST00000301964 2355 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 SLC25A48-201ENST00000274513 1880 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 CRYBB2P1-202ENST00000382734 1364 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 KCNN4-209ENST00000615047 2029 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 TBC1D10C-201ENST00000312390 1497 ntTSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 OGFOD2-222ENST00000545317 1481 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 LRRC32-202ENST00000404995 2656 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 NOTCH3-201ENST00000263388 8666 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 ANKRD18DP-201ENST00000335478 2171 ntTSL 2 BASIC17.62■□□□□ 0.41
VPS4AQ9UN37 TRAF4-201ENST00000262395 2923 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 SETMAR-206ENST00000430981 1671 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 TXNRD3-202ENST00000523403 2351 ntAPPRIS ALT2 TSL 2 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 THOP1-205ENST00000586677 1872 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 RPL39L-203ENST00000455270 653 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 AL359075.1-203ENST00000462729 1002 ntBASIC17.61■□□□□ 0.41
VPS4AQ9UN37 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 AL158151.3-201ENST00000599172 696 ntTSL 5 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 CCDC157-203ENST00000405659 3052 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 STK25-203ENST00000403346 2210 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 ZNF865-201ENST00000568956 4005 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 SOST-201ENST00000301691 2300 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 RPS6KA3-201ENST00000379565 7918 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 TWIST2-202ENST00000612363 1404 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 SLC35A2-217ENST00000635589 1424 ntTSL 2 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 ING5-201ENST00000313552 5196 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 SLC39A3-202ENST00000455372 2940 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
VPS4AQ9UN37 PAQR6-201ENST00000292291 1908 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 ALDOC-201ENST00000226253 1982 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 SLC39A5-201ENST00000266980 2031 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 HCK-202ENST00000375852 2082 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 CTNNBL1-204ENST00000405275 2076 ntTSL 5 BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 MINPP1-201ENST00000371994 2183 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 FBLIM1-202ENST00000375766 3695 ntAPPRIS P1 TSL 2 BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 FBXL15-201ENST00000224862 2362 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
VPS4AQ9UN37 SEMA6B-201ENST00000586582 3986 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 56.7 ms