Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 AL357033.4-201ENST00000617703 1807 ntBASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 AC010186.2-201ENST00000575094 2612 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 NDUFS6-201ENST00000274137 1082 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 BUB3-202ENST00000368859 667 ntTSL 3 BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 TIMM17B-201ENST00000376582 950 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 SNORA78-201ENST00000459373 127 ntBASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 BNIP3L-206ENST00000523515 915 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 AC008622.2-201ENST00000617006 1229 ntBASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 MYC-208ENST00000641036 567 ntBASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 HOXB6-201ENST00000225648 1660 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 ARMC10-209ENST00000454559 2347 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 DIO3OS-212ENST00000557661 1937 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 MTERF2-202ENST00000392830 1763 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 TBC1D3P2-202ENST00000577902 1649 ntBASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 ARHGAP27-214ENST00000532891 2604 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 AZU1-202ENST00000592205 1713 ntTSL 2 BASIC21.07■□□□□ 0.96
CCDC39Q9UFE4 CBFB-202ENST00000412916 2971 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 CAMK2G-205ENST00000372765 1822 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 AL109659.2-201ENST00000606809 1674 ntBASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 PML-220ENST00000569477 2251 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 LOXL3-205ENST00000409986 2005 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 CT47A1-201ENST00000433030 1288 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 AC008763.3-201ENST00000597959 777 ntAPPRIS P1 TSL 4 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 TCF3-204ENST00000453954 3585 ntTSL 5 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 AC005865.2-201ENST00000505276 2303 ntTSL 2 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 PSRC1-201ENST00000369903 1710 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 PSRC1-206ENST00000409267 1730 ntAPPRIS P3 TSL 5 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 DIP2A-204ENST00000457905 3044 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 EDA-204ENST00000374553 5272 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 NR2F1-201ENST00000327111 3732 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 MID1IP1-201ENST00000336949 2536 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 TJP3-201ENST00000539908 2897 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
CCDC39Q9UFE4 USP18-201ENST00000215794 2129 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 BECN1-201ENST00000361523 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 APOA5-201ENST00000227665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 TMEM240-201ENST00000378733 718 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 AVL9-209ENST00000640103 1367 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 MRPL3-202ENST00000425847 1457 ntTSL 2 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 TRIM41-202ENST00000351937 2696 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 SYTL3-203ENST00000367081 2692 ntAPPRIS P3 TSL 5 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 HR-201ENST00000312841 5351 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 RIMS4-201ENST00000372851 5203 ntAPPRIS P3 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 CDK10-202ENST00000353379 1798 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 PITPNM2-209ENST00000546049 1793 ntTSL 5 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 C16orf59-204ENST00000563531 1864 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
CCDC39Q9UFE4 KHDC1-202ENST00000370384 1430 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 AL365232.1-201ENST00000423730 1636 ntAPPRIS P1 TSL 5 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 INPP5A-203ENST00000368594 2967 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 GOLGA2P9-203ENST00000600260 2033 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 SKOR1-204ENST00000554240 3597 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 ENSA-205ENST00000361532 792 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 PDCD5-207ENST00000590247 699 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 AL590094.1-202ENST00000634619 1131 ntTSL 5 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 FTCDNL1-204ENST00000622774 1997 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 LRCH3-201ENST00000334859 2258 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 SERPINH1-215ENST00000533603 2299 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 DNAJA3-202ENST00000355296 2591 ntAPPRIS ALT1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 SLX1B-SULT1A4-201ENST00000344620 2424 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 MLXIP-201ENST00000319080 8427 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 SAAL1-201ENST00000300013 1518 ntAPPRIS ALT1 TSL 2 BASIC21.04■□□□□ 0.96
CCDC39Q9UFE4 DOC2B-203ENST00000613549 6048 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 SLC30A2-202ENST00000374278 3097 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 TNIP1-211ENST00000521591 2274 ntAPPRIS P3 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 CPT2-208ENST00000636891 2746 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 CPT2-210ENST00000637252 2739 ntTSL 5 BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 C19orf57-208ENST00000591586 1559 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 SERPINH1-212ENST00000530284 1358 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 PMEPA1-204ENST00000395814 800 ntTSL 3 BASIC21.03■□□□□ 0.96
CCDC39Q9UFE4 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 66.6 ms