Protein–RNA interactions for Protein: Q9H211

CDT1, DNA replication factor Cdt1, humanhuman

Predictions only

Length 546 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDT1Q9H211 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC19.64■□□□□ 0.74
CDT1Q9H211 CBX1-202ENST00000393408 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDT1Q9H211 SNAPC3-207ENST00000610884 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CDT1Q9H211 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 CABP7-201ENST00000216144 3259 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 CHIC2-201ENST00000263921 1194 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 KLK12-202ENST00000319590 1074 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CDT1Q9H211 S100A3-201ENST00000368712 579 ntAPPRIS P1 TSL 3 BASIC19.64■□□□□ 0.73
CDT1Q9H211 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC19.64■□□□□ 0.73
CDT1Q9H211 BIRC5-207ENST00000590449 568 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 NSUN5P1-202ENST00000421140 1535 ntBASIC19.64■□□□□ 0.73
CDT1Q9H211 NSUN5P2-203ENST00000457352 1529 ntBASIC19.64■□□□□ 0.73
CDT1Q9H211 FAM9A-202ENST00000543214 1544 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 MORN1-203ENST00000378531 1798 ntAPPRIS P3 TSL 2 BASIC19.64■□□□□ 0.73
CDT1Q9H211 FAM157B-201ENST00000446912 1795 ntTSL 2 BASIC19.64■□□□□ 0.73
CDT1Q9H211 AC063977.6-201ENST00000600074 1763 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.64■□□□□ 0.73
CDT1Q9H211 BANP-202ENST00000355022 2164 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC19.64■□□□□ 0.73
CDT1Q9H211 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CDT1Q9H211 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CDT1Q9H211 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC19.63■□□□□ 0.73
CDT1Q9H211 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 COPS7A-215ENST00000543155 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 POLR2C-201ENST00000219252 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 CTSD-212ENST00000637815 2003 ntAPPRIS ALT2 TSL 5 BASIC19.63■□□□□ 0.73
CDT1Q9H211 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.63■□□□□ 0.73
CDT1Q9H211 PTGES-201ENST00000340607 1774 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 CD1E-205ENST00000368160 1727 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC19.63■□□□□ 0.73
CDT1Q9H211 CCT6P1-202ENST00000442266 1317 ntTSL 2 BASIC19.63■□□□□ 0.73
CDT1Q9H211 BEX4-201ENST00000372691 1066 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDT1Q9H211 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC19.63■□□□□ 0.73
CDT1Q9H211 AL450487.1-201ENST00000426799 995 ntBASIC19.63■□□□□ 0.73
CDT1Q9H211 BET1L-206ENST00000486280 665 ntTSL 3 BASIC19.63■□□□□ 0.73
CDT1Q9H211 CDV3-207ENST00000508481 661 ntTSL 3 BASIC19.63■□□□□ 0.73
CDT1Q9H211 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC19.63■□□□□ 0.73
CDT1Q9H211 AC005336.2-201ENST00000593183 939 ntBASIC19.63■□□□□ 0.73
CDT1Q9H211 HNF4A-208ENST00000609795 1192 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 TMEM179-201ENST00000341595 2513 ntTSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 UMOD-201ENST00000302509 2477 ntAPPRIS P3 TSL 5 BASIC19.63■□□□□ 0.73
CDT1Q9H211 MSLN-202ENST00000545450 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 KRT8-216ENST00000552551 2126 ntAPPRIS P1 TSL 2 BASIC19.63■□□□□ 0.73
CDT1Q9H211 AGAP1-205ENST00000409538 6138 ntTSL 5 BASIC19.63■□□□□ 0.73
CDT1Q9H211 C11orf58-201ENST00000228136 2049 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CDT1Q9H211 NDRG2-208ENST00000397851 2022 ntAPPRIS P4 TSL 2 BASIC19.63■□□□□ 0.73
CDT1Q9H211 ZIC3-202ENST00000370606 1968 ntTSL 5 BASIC19.63■□□□□ 0.73
CDT1Q9H211 FAM50B-202ENST00000380274 1932 ntAPPRIS P1 BASIC19.63■□□□□ 0.73
CDT1Q9H211 POR-209ENST00000439269 1858 ntTSL 2 BASIC19.62■□□□□ 0.73
CDT1Q9H211 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 INF2-204ENST00000398337 1689 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 NAT8L-201ENST00000331662 5571 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 IDS-202ENST00000370441 1399 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 TEX13A-201ENST00000600991 1377 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 INPP5F-203ENST00000369081 874 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 DYNLL1-203ENST00000392509 814 ntAPPRIS P1 TSL 3 BASIC19.62■□□□□ 0.73
CDT1Q9H211 AKR7L-201ENST00000420396 1240 ntAPPRIS ALT2 TSL 5 BASIC19.62■□□□□ 0.73
CDT1Q9H211 FOSL1P1-201ENST00000511041 816 ntBASIC19.62■□□□□ 0.73
CDT1Q9H211 SDHD-206ENST00000528182 754 ntTSL 3 BASIC19.62■□□□□ 0.73
CDT1Q9H211 RAP1B-228ENST00000542145 1060 ntTSL 2 BASIC19.62■□□□□ 0.73
CDT1Q9H211 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC19.62■□□□□ 0.73
CDT1Q9H211 AC099336.1-202ENST00000602961 463 ntBASIC19.62■□□□□ 0.73
CDT1Q9H211 AC004130.1-202ENST00000603156 666 ntTSL 2 BASIC19.62■□□□□ 0.73
CDT1Q9H211 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC19.62■□□□□ 0.73
CDT1Q9H211 ECSIT-202ENST00000270517 1700 ntAPPRIS P3 TSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 GOLGA6L10-207ENST00000610657 1705 ntAPPRIS P2 TSL 2 BASIC19.62■□□□□ 0.73
CDT1Q9H211 OGFOD2-211ENST00000538628 1696 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 CCDC88C-203ENST00000389856 1641 ntTSL 1 (best) BASIC19.62■□□□□ 0.73
CDT1Q9H211 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC19.62■□□□□ 0.73
CDT1Q9H211 PCBP3-206ENST00000400314 2202 ntAPPRIS P2 TSL 5 BASIC19.61■□□□□ 0.73
CDT1Q9H211 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC19.61■□□□□ 0.73
CDT1Q9H211 LRRC29-201ENST00000393992 1468 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 MTSS1L-201ENST00000338779 4992 ntAPPRIS P2 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 CLK1-205ENST00000434813 2026 ntTSL 2 BASIC19.61■□□□□ 0.73
CDT1Q9H211 YIF1B-204ENST00000392124 1404 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 KIF25-AS1-201ENST00000414364 1420 ntTSL 2 BASIC19.61■□□□□ 0.73
CDT1Q9H211 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC19.61■□□□□ 0.73
CDT1Q9H211 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC19.61■□□□□ 0.73
CDT1Q9H211 NPFFR2-201ENST00000308744 1922 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 OGFOD2-212ENST00000538755 1949 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 MADD-208ENST00000405573 1823 ntTSL 5 BASIC19.61■□□□□ 0.73
CDT1Q9H211 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 STX8-201ENST00000306357 1246 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 SBDSP1-202ENST00000423945 618 ntTSL 3 BASIC19.61■□□□□ 0.73
CDT1Q9H211 ZNF655-218ENST00000454654 571 ntTSL 4 BASIC19.61■□□□□ 0.73
CDT1Q9H211 POLR2M-203ENST00000464277 910 ntTSL 1 (best) BASIC19.61■□□□□ 0.73
CDT1Q9H211 RPP14-206ENST00000466547 805 ntAPPRIS P1 TSL 3 BASIC19.61■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms