Protein–RNA interactions for Protein: Q9BRZ2

TRIM56, E3 ubiquitin-protein ligase TRIM56, humanhuman

Known RBP Predictions only

Length 755 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM56Q9BRZ2 HBA1-201ENST00000320868 577 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 TMEM263-208ENST00000551489 621 ntTSL 4 BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 PEPD-203ENST00000436370 1638 ntTSL 2 BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 SHISA3-201ENST00000319234 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 DVL2-209ENST00000575458 2659 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 GOLGA6L2-204ENST00000567107 3030 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 MAFK-201ENST00000343242 3368 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 AC134043.2-201ENST00000624206 2238 ntBASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 AC138028.4-201ENST00000564984 1845 ntBASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 TBXA2R-204ENST00000589966 1814 ntTSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 C6orf223-203ENST00000442114 3109 ntAPPRIS ALT2 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 AL512380.2-201ENST00000637901 1780 ntTSL 5 BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 SLC35G2-202ENST00000446465 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
TRIM56Q9BRZ2 CCNC-207ENST00000518714 1426 ntTSL 5 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 PTPN21-208ENST00000556564 6166 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 WDR25-202ENST00000402312 1969 ntAPPRIS P1 TSL 2 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 NEXN-AS1-201ENST00000421331 2292 ntTSL 2 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 SIRT1-201ENST00000212015 4094 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 ZBTB4-202ENST00000380599 5866 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 STK25-201ENST00000316586 4619 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 TRIM15-207ENST00000376694 2214 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 ALDH3A1-206ENST00000457500 1925 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 STX2-201ENST00000261653 3331 ntAPPRIS ALT1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 C1orf159-204ENST00000379339 2429 ntAPPRIS ALT2 TSL 2 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 INGX-201ENST00000359239 846 ntBASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 NPM3-201ENST00000370110 877 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 VAV2-203ENST00000406606 4691 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 METTL21A-206ENST00000432416 869 ntTSL 3 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 SNORA78-201ENST00000459373 127 ntBASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 WDR86-AS1-203ENST00000480632 704 ntTSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 CLPB-212ENST00000543042 2133 ntTSL 2 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 AC005943.1-201ENST00000585937 1002 ntAPPRIS P1 TSL 3 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 NAT14-202ENST00000587400 416 ntTSL 5 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 RABAC1-210ENST00000601891 628 ntTSL 3 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 PLA2G12A-201ENST00000243501 5226 ntAPPRIS P2 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 TXNL4A-201ENST00000269601 3504 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 ENTPD2-202ENST00000355097 2095 ntAPPRIS P1 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 CD164L2-202ENST00000374027 1457 ntAPPRIS P3 TSL 1 (best) BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 FDXR-203ENST00000420580 1705 ntTSL 2 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 AC090206.1-201ENST00000615734 1678 ntTSL 5 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC18.57■□□□□ 0.56
TRIM56Q9BRZ2 CHRD-202ENST00000348986 3155 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 RAB22A-201ENST00000244040 8670 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 CAMK4-210ENST00000512453 1640 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 KCNK4-205ENST00000538767 1389 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 BACE1-201ENST00000313005 6326 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 GOSR1-201ENST00000225724 6039 ntAPPRIS P3 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 RIC8A-208ENST00000527696 2565 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 FST-202ENST00000396947 2538 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 RASL10B-201ENST00000603017 3205 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 AC020916.1-201ENST00000587762 1774 ntBASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 AL139099.2-201ENST00000555043 2469 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 MSANTD1-201ENST00000438480 2922 ntAPPRIS P3 TSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 MRPL54-201ENST00000330133 626 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 HIST1H2APS4-201ENST00000362070 348 ntBASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 AC012618.3-203ENST00000426044 917 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 YKT6-207ENST00000496112 1270 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 MVB12A-204ENST00000528515 686 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 AL355075.4-201ENST00000554988 638 ntBASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 CR769767.2-201ENST00000622735 460 ntBASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 AC008687.8-201ENST00000599795 1748 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 CACNA1I-201ENST00000401624 6740 ntAPPRIS ALT2 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 SCYL1-202ENST00000279270 1659 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 GATB-213ENST00000515812 1893 ntTSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 DGKI-203ENST00000446122 4070 ntAPPRIS ALT2 TSL 5 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 ITGA4-202ENST00000339307 1403 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 ARID3C-201ENST00000378909 1411 ntAPPRIS P1 TSL 2 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 FERMT2-204ENST00000399304 2082 ntTSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 PRR29-AS1-202ENST00000580942 2926 ntTSL 2 BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 TCEA1-208ENST00000521604 2858 ntAPPRIS P1 TSL 1 (best) BASIC18.56■□□□□ 0.56
TRIM56Q9BRZ2 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 NCF1-201ENST00000289473 1396 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 MAP4K4-205ENST00000350878 7640 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 LPAR2-201ENST00000407877 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 NOX4-201ENST00000263317 2388 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 SERPINE2-206ENST00000447280 1716 ntTSL 2 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 GATAD2A-202ENST00000360315 5671 ntAPPRIS P3 TSL 5 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 CYP4F2-201ENST00000011989 2067 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 PDE9A-206ENST00000380328 1875 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 FAM182B-201ENST00000376403 1681 ntAPPRIS P5 TSL 1 (best) BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC18.55■□□□□ 0.56
TRIM56Q9BRZ2 UNC93B2-201ENST00000285383 730 ntBASIC18.55■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 24.8 ms