Protein–RNA interactions for Protein: Q9BRG1

VPS25, Vacuolar protein-sorting-associated protein 25, humanhuman

Predictions only

Length 176 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS25Q9BRG1 HECTD2-203ENST00000371681 2175 ntTSL 2 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 USH1C-205ENST00000527020 2159 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 LRRK1-201ENST00000388948 7671 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 ISYNA1-206ENST00000578963 1691 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 PLXNB2-207ENST00000449103 6383 ntAPPRIS P1 TSL 5 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 GRK6-211ENST00000528793 2571 ntTSL 1 (best) BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 C16orf71-204ENST00000590191 2564 ntAPPRIS ALT2 TSL 5 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 TMEM209-202ENST00000462753 2322 ntAPPRIS ALT1 TSL 5 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC12.7□□□□□ -0.38
VPS25Q9BRG1 GALNT18-201ENST00000227756 2504 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 LHX1-201ENST00000614239 3425 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 ZMYM3-206ENST00000373988 6021 ntAPPRIS ALT1 TSL 5 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 GGN-201ENST00000334928 2239 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 FASTKD5-201ENST00000380266 2874 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 SLC39A7-202ENST00000374677 2409 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 MCL1-202ENST00000369026 3932 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 ENTPD8-204ENST00000472938 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 PTPN5-204ENST00000396170 3871 ntTSL 2 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 RUBCNL-204ENST00000378797 3206 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 KRAS-202ENST00000311936 5765 ntAPPRIS ALT1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 TMEM170A-206ENST00000569276 609 ntTSL 2 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 THA1P-201ENST00000590384 1145 ntBASIC12.69□□□□□ -0.38
VPS25Q9BRG1 SRP68-213ENST00000629930 165 ntTSL 5 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 TACR2-201ENST00000373306 2083 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 C17orf62-203ENST00000434650 2050 ntTSL 2 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 EIF4G3-204ENST00000374935 5567 ntAPPRIS ALT2 TSL 5 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 LAMA3-202ENST00000313654 10661 ntAPPRIS P3 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 TMEM179-204ENST00000556573 1430 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 DSCR9-201ENST00000454482 1644 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 CASC2-205ENST00000454781 2216 ntTSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 FAM98A-201ENST00000238823 2816 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 TSC22D1-211ENST00000501704 4026 ntTSL 2 BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 B3GAT2-201ENST00000230053 6565 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 SMIM4-203ENST00000477703 1770 ntAPPRIS P1 TSL 1 (best) BASIC12.69□□□□□ -0.38
VPS25Q9BRG1 OR52A1-202ENST00000380367 9783 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 NAA60-201ENST00000360862 2522 ntTSL 2 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 TCAIM-201ENST00000342649 3687 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 PANX2-202ENST00000395842 3051 ntAPPRIS P1 TSL 2 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 ILF3-210ENST00000588657 2697 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 ELN-208ENST00000380575 3043 ntAPPRIS ALT2 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 HIC2-202ENST00000407598 4734 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 FAM160B1-202ENST00000369248 5810 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 POR-209ENST00000439269 1858 ntTSL 2 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 TRPA1-201ENST00000262209 5223 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 LRRTM1-201ENST00000295057 2599 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 STMN4-201ENST00000265770 1250 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 PRELID1-201ENST00000303204 1261 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 C1QTNF12-201ENST00000330388 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 AC079089.2-201ENST00000531211 1277 ntBASIC12.68□□□□□ -0.38
VPS25Q9BRG1 MIR4281-201ENST00000580852 62 ntBASIC12.68□□□□□ -0.38
VPS25Q9BRG1 H2AFB1-201ENST00000620016 587 ntAPPRIS P1 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 ATG14-201ENST00000247178 4742 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 AL161938.1-201ENST00000569833 2180 ntBASIC12.68□□□□□ -0.38
VPS25Q9BRG1 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 SRGAP3-201ENST00000360413 8415 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 ALG1-204ENST00000588623 2671 ntTSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 WDR34-201ENST00000372715 1755 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 PCBP4-210ENST00000471622 1784 ntTSL 5 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 GAD2-201ENST00000259271 2462 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 C7orf49-203ENST00000430372 1579 ntTSL 5 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 AC093525.10-201ENST00000625130 1569 ntBASIC12.68□□□□□ -0.38
VPS25Q9BRG1 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC12.68□□□□□ -0.38
VPS25Q9BRG1 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC12.67□□□□□ -0.38
VPS25Q9BRG1 OSGIN1-201ENST00000343939 2391 ntTSL 2 BASIC12.67□□□□□ -0.38
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms