Protein–RNA interactions for Protein: Q99742

NPAS1, Neuronal PAS domain-containing protein 1, humanhuman

Predictions only

Length 590 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS1Q99742 ECE1-203ENST00000374893 2484 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 EGFL6-201ENST00000361306 2398 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 GBX2-203ENST00000551105 1307 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 NTMT1-211ENST00000617943 1346 ntTSL 3 BASIC16.56■□□□□ 0.24
NPAS1Q99742 ISCU-202ENST00000392807 1069 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
NPAS1Q99742 ISCU-203ENST00000431221 799 ntTSL 2 BASIC16.56■□□□□ 0.24
NPAS1Q99742 LBX1-AS1-203ENST00000454527 740 ntTSL 5 BASIC16.56■□□□□ 0.24
NPAS1Q99742 AC116353.4-201ENST00000507279 576 ntTSL 4 BASIC16.56■□□□□ 0.24
NPAS1Q99742 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC16.56■□□□□ 0.24
NPAS1Q99742 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC16.56■□□□□ 0.24
NPAS1Q99742 CLN6-204ENST00000564752 900 ntTSL 3 BASIC16.56■□□□□ 0.24
NPAS1Q99742 AC087388.1-201ENST00000571370 1112 ntBASIC16.56■□□□□ 0.24
NPAS1Q99742 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC16.56■□□□□ 0.24
NPAS1Q99742 CD24-206ENST00000620405 586 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
NPAS1Q99742 SMPD3-201ENST00000219334 5453 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 MAEA-201ENST00000264750 2058 ntTSL 2 BASIC16.56■□□□□ 0.24
NPAS1Q99742 HARBI1-201ENST00000326737 1967 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 BICD1-207ENST00000551848 1962 ntBASIC16.56■□□□□ 0.24
NPAS1Q99742 HMGA1-201ENST00000311487 1920 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 LINC00535-201ENST00000501400 1914 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
NPAS1Q99742 FIBCD1-201ENST00000372337 1868 ntTSL 5 BASIC16.56■□□□□ 0.24
NPAS1Q99742 PHGDH-209ENST00000641074 1780 ntBASIC16.56■□□□□ 0.24
NPAS1Q99742 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
NPAS1Q99742 PDIA2-202ENST00000404312 1575 ntAPPRIS ALT2 TSL 5 BASIC16.55■□□□□ 0.24
NPAS1Q99742 PIP4K2C-202ENST00000422156 1558 ntTSL 2 BASIC16.55■□□□□ 0.24
NPAS1Q99742 DPYSL4-202ENST00000368627 1545 ntTSL 5 BASIC16.55■□□□□ 0.24
NPAS1Q99742 COQ9-210ENST00000567072 1482 ntTSL 3 BASIC16.55■□□□□ 0.24
NPAS1Q99742 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 FAM66C-209ENST00000544214 2623 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 FCMR-201ENST00000367091 1950 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 DYNLL1-209ENST00000550845 1376 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 RNH1-201ENST00000354420 1894 ntAPPRIS P1 TSL 5 BASIC16.55■□□□□ 0.24
NPAS1Q99742 MID1IP1-202ENST00000378474 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.55■□□□□ 0.24
NPAS1Q99742 RNF128-201ENST00000255499 2817 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 DUSP15-203ENST00000375966 1077 ntTSL 3 BASIC16.55■□□□□ 0.24
NPAS1Q99742 DUSP15-204ENST00000398083 1212 ntTSL 5 BASIC16.55■□□□□ 0.24
NPAS1Q99742 AC005091.1-201ENST00000441955 1190 ntTSL 3 BASIC16.55■□□□□ 0.24
NPAS1Q99742 C12orf76-204ENST00000547573 607 ntTSL 3 BASIC16.55■□□□□ 0.24
NPAS1Q99742 ZNF444P1-201ENST00000559497 298 ntBASIC16.55■□□□□ 0.24
NPAS1Q99742 LINC01238-205ENST00000567549 1107 ntBASIC16.55■□□□□ 0.24
NPAS1Q99742 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
NPAS1Q99742 SYNGR4-204ENST00000601610 859 ntTSL 3 BASIC16.55■□□□□ 0.24
NPAS1Q99742 CD276-201ENST00000318424 2738 ntTSL 5 BASIC16.55■□□□□ 0.24
NPAS1Q99742 RGS3-202ENST00000342620 1714 ntTSL 5 BASIC16.55■□□□□ 0.24
NPAS1Q99742 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 ACSL6-205ENST00000379246 2622 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 DTX2-206ENST00000430490 2623 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.55■□□□□ 0.24
NPAS1Q99742 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 PMS1-206ENST00000418224 3018 ntTSL 5 BASIC16.55■□□□□ 0.24
NPAS1Q99742 AIRN-201ENST00000601203 4374 ntBASIC16.55■□□□□ 0.24
NPAS1Q99742 ZBTB45-202ENST00000594051 2541 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
NPAS1Q99742 HNRNPK-202ENST00000360384 2038 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 GMCL1P1-201ENST00000463439 1581 ntBASIC16.55■□□□□ 0.24
NPAS1Q99742 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
NPAS1Q99742 PLCG1-AS1-201ENST00000454626 1462 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 POMC-204ENST00000405623 1426 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 STRA6-209ENST00000563965 2565 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 RNF113B-201ENST00000267291 1376 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 CHRNB4-202ENST00000412074 1355 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 WDTC1-201ENST00000319394 4819 ntAPPRIS ALT1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 AC087500.1-202ENST00000571689 1715 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 RGS20-203ENST00000344277 1667 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC16.54■□□□□ 0.24
NPAS1Q99742 P2RY6-208ENST00000540124 2351 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 ARMC10P1-201ENST00000313754 855 ntBASIC16.54■□□□□ 0.24
NPAS1Q99742 BET1L-202ENST00000332865 533 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS1Q99742 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 FAM86EP-206ENST00000510506 987 ntBASIC16.54■□□□□ 0.24
NPAS1Q99742 CLDN7-204ENST00000571881 735 ntTSL 3 BASIC16.54■□□□□ 0.24
NPAS1Q99742 EEF2KMT-206ENST00000587133 873 ntAPPRIS ALT2 TSL 3 BASIC16.54■□□□□ 0.24
NPAS1Q99742 GFOD2-207ENST00000602855 819 ntTSL 3 BASIC16.54■□□□□ 0.24
NPAS1Q99742 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC16.54■□□□□ 0.24
NPAS1Q99742 TTLL12-201ENST00000216129 3385 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 DTX2-211ENST00000446600 2281 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS1Q99742 RTCA-203ENST00000370128 2535 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 STX6-204ENST00000542060 4809 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS1Q99742 ESAM-201ENST00000278927 1826 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 SPACA1-201ENST00000237201 1499 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 DAPK2-205ENST00000558069 1473 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS1Q99742 SPTBN4-202ENST00000352632 8676 ntAPPRIS P2 TSL 5 BASIC16.54■□□□□ 0.24
NPAS1Q99742 TCAP-201ENST00000309889 2123 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
NPAS1Q99742 TTC22-201ENST00000371274 2149 ntTSL 2 BASIC16.54■□□□□ 0.24
NPAS1Q99742 HNRNPLL-202ENST00000358367 2779 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS1Q99742 CHRFAM7A-202ENST00000397827 2794 ntTSL 5 BASIC16.54■□□□□ 0.24
NPAS1Q99742 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC16.53■□□□□ 0.24
NPAS1Q99742 SPSB3-201ENST00000301717 1449 ntAPPRIS P1 TSL 1 (best) BASIC16.53■□□□□ 0.24
NPAS1Q99742 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC16.53■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 33.7 ms