Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 PLXNB2-214ENST00000614805 1387 ntTSL 5 BASIC18.9■□□□□ 0.62
CDX2Q99626 P2RX2-206ENST00000389110 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 MOV10L1-203ENST00000395852 1422 ntTSL 2 BASIC18.9■□□□□ 0.62
CDX2Q99626 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.9■□□□□ 0.62
CDX2Q99626 CSK-202ENST00000439220 1900 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
CDX2Q99626 KRT16P3-203ENST00000580621 1939 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 AC009102.3-201ENST00000623118 1491 ntBASIC18.9■□□□□ 0.62
CDX2Q99626 TBC1D10A-204ENST00000403477 1950 ntAPPRIS ALT2 TSL 2 BASIC18.9■□□□□ 0.62
CDX2Q99626 CADPS-219ENST00000612439 5455 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
CDX2Q99626 EARS2-210ENST00000564501 2027 ntTSL 5 BASIC18.9■□□□□ 0.62
CDX2Q99626 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CDX2Q99626 SP3-208ENST00000640958 2142 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.62
CDX2Q99626 ZNF655-202ENST00000320583 1601 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CDX2Q99626 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
CDX2Q99626 SNAI3-201ENST00000332281 1732 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX2Q99626 AC009041.2-206ENST00000563863 1728 ntTSL 2 BASIC18.89■□□□□ 0.61
CDX2Q99626 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CDX2Q99626 EP400NL-214ENST00000641289 2402 ntBASIC18.89■□□□□ 0.61
CDX2Q99626 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDX2Q99626 KRT18P65-201ENST00000439811 1286 ntBASIC18.89■□□□□ 0.61
CDX2Q99626 H2AFV-207ENST00000446531 1041 ntTSL 2 BASIC18.89■□□□□ 0.61
CDX2Q99626 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC18.89■□□□□ 0.61
CDX2Q99626 HOXB-AS4-202ENST00000480386 566 ntTSL 4 BASIC18.89■□□□□ 0.61
CDX2Q99626 VPS29-207ENST00000549970 818 ntTSL 3 BASIC18.89■□□□□ 0.61
CDX2Q99626 ZFPM1-204ENST00000563351 808 ntTSL 2 BASIC18.89■□□□□ 0.61
CDX2Q99626 AC217774.2-201ENST00000580347 560 ntTSL 4 BASIC18.89■□□□□ 0.61
CDX2Q99626 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC18.89■□□□□ 0.61
CDX2Q99626 AC005944.1-201ENST00000592758 564 ntTSL 3 BASIC18.89■□□□□ 0.61
CDX2Q99626 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC18.89■□□□□ 0.61
CDX2Q99626 AL353135.1-201ENST00000606729 504 ntBASIC18.89■□□□□ 0.61
CDX2Q99626 AL358472.5-202ENST00000641448 1267 ntBASIC18.89■□□□□ 0.61
CDX2Q99626 NECAB3-202ENST00000375238 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX2Q99626 MYO1D-213ENST00000583621 1916 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
CDX2Q99626 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX2Q99626 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX2Q99626 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.89■□□□□ 0.61
CDX2Q99626 TARSL2-207ENST00000615656 2356 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.61
CDX2Q99626 HPDL-201ENST00000334815 1629 ntAPPRIS P1 BASIC18.89■□□□□ 0.61
CDX2Q99626 MTMR14-201ENST00000296003 2494 ntAPPRIS P4 TSL 1 (best) BASIC18.89■□□□□ 0.61
CDX2Q99626 UBQLN4P1-201ENST00000461599 1801 ntBASIC18.88■□□□□ 0.61
CDX2Q99626 AL024508.2-201ENST00000607749 1894 ntBASIC18.88■□□□□ 0.61
CDX2Q99626 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.88■□□□□ 0.61
CDX2Q99626 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 POP7-201ENST00000303151 927 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 AC003669.1-201ENST00000334569 611 ntBASIC18.88■□□□□ 0.61
CDX2Q99626 MIR943-201ENST00000401286 94 ntBASIC18.88■□□□□ 0.61
CDX2Q99626 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC18.88■□□□□ 0.61
CDX2Q99626 LEPROTL1-204ENST00000518192 847 ntTSL 3 BASIC18.88■□□□□ 0.61
CDX2Q99626 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC18.88■□□□□ 0.61
CDX2Q99626 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 VASH1-204ENST00000554743 1096 ntTSL 3 BASIC18.88■□□□□ 0.61
CDX2Q99626 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC18.88■□□□□ 0.61
CDX2Q99626 AC103808.2-201ENST00000582755 594 ntTSL 4 BASIC18.88■□□□□ 0.61
CDX2Q99626 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC18.88■□□□□ 0.61
CDX2Q99626 AD001527.2-201ENST00000622994 785 ntBASIC18.88■□□□□ 0.61
CDX2Q99626 FOXJ1-201ENST00000322957 2641 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 REM2-202ENST00000536884 1331 ntTSL 2 BASIC18.88■□□□□ 0.61
CDX2Q99626 WDR45-240ENST00000635003 1376 ntTSL 3 BASIC18.88■□□□□ 0.61
CDX2Q99626 AP003717.1-202ENST00000537019 1412 ntTSL 5 BASIC18.88■□□□□ 0.61
CDX2Q99626 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC18.88■□□□□ 0.61
CDX2Q99626 AC138969.1-205ENST00000381497 1552 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 TNFSF9-201ENST00000245817 1665 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 BEST2-204ENST00000553030 2000 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
CDX2Q99626 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC18.88■□□□□ 0.61
CDX2Q99626 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC18.88■□□□□ 0.61
CDX2Q99626 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
CDX2Q99626 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.87■□□□□ 0.61
CDX2Q99626 PSMA7-201ENST00000370858 925 ntTSL 2 BASIC18.87■□□□□ 0.61
CDX2Q99626 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
CDX2Q99626 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 CENPM-205ENST00000404067 905 ntTSL 3 BASIC18.87■□□□□ 0.61
CDX2Q99626 RAC2-204ENST00000406508 893 ntTSL 5 BASIC18.87■□□□□ 0.61
CDX2Q99626 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.87■□□□□ 0.61
CDX2Q99626 MACROD2-AS1-201ENST00000439451 1230 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 PIGZ-204ENST00000443835 675 ntTSL 4 BASIC18.87■□□□□ 0.61
CDX2Q99626 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.87■□□□□ 0.61
CDX2Q99626 KRT85-202ENST00000544265 1387 ntTSL 2 BASIC18.87■□□□□ 0.61
CDX2Q99626 TVP23B-206ENST00000574226 1080 ntAPPRIS ALT1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 PSMD8-207ENST00000592035 1581 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 SIRT6-203ENST00000594279 1507 ntTSL 3 BASIC18.87■□□□□ 0.61
CDX2Q99626 AC010336.3-201ENST00000597156 667 ntTSL 2 BASIC18.87■□□□□ 0.61
CDX2Q99626 AC099343.3-201ENST00000605834 2503 ntBASIC18.87■□□□□ 0.61
CDX2Q99626 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 AC009093.7-201ENST00000623853 1223 ntBASIC18.87■□□□□ 0.61
CDX2Q99626 AC073592.5-201ENST00000624854 528 ntBASIC18.87■□□□□ 0.61
CDX2Q99626 AC007064.4-201ENST00000637740 555 ntBASIC18.87■□□□□ 0.61
CDX2Q99626 PHLPP1-201ENST00000262719 6390 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC18.87■□□□□ 0.61
CDX2Q99626 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC18.87■□□□□ 0.61
CDX2Q99626 ABCG4-204ENST00000615496 2459 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 22.1 ms