Protein–RNA interactions for Protein: Q96DI7

SNRNP40, U5 small nuclear ribonucleoprotein 40 kDa protein, humanhuman

Known RBP Predictions only

Length 357 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40Q96DI7 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 LAD1-202ENST00000391967 2906 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 GGCT-205ENST00000409436 954 ntTSL 3 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 CAMTA1-IT1-201ENST00000427317 365 ntTSL 3 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 KRT18P3-201ENST00000451602 1288 ntBASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 HTD2-201ENST00000461393 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 NMU-202ENST00000505262 693 ntTSL 3 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 RNA5SP415-201ENST00000517246 115 ntBASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 C8orf46-215ENST00000522977 1347 ntTSL 2 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 YAP1-208ENST00000531439 1490 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 AP005233.2-201ENST00000561588 372 ntTSL 3 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 FDXR-214ENST00000581530 1827 ntAPPRIS P3 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 AL024508.2-201ENST00000607749 1894 ntBASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 Z83851.2-201ENST00000609564 659 ntBASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 C1QL3-202ENST00000619991 783 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 RAB34-226ENST00000636772 1180 ntTSL 5 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 PTPRE-201ENST00000254667 5331 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
SNRNP40Q96DI7 GIT1-201ENST00000225394 3768 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 SEPT11-209ENST00000510515 1886 ntTSL 2 BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 LIMS2-204ENST00000409286 1678 ntTSL 2 BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 GPANK1-201ENST00000375893 1598 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 LCE1B-201ENST00000360090 1139 ntAPPRIS P1 BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 TMEM128-202ENST00000382753 1221 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 RPSAP43-201ENST00000402237 625 ntBASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 AC008429.1-203ENST00000518894 548 ntTSL 4 BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 AL139424.1-201ENST00000607572 797 ntBASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 C19orf25-202ENST00000436106 2403 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 RELB-201ENST00000221452 2294 ntAPPRIS P2 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 IGFALS-201ENST00000215539 2116 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 GPR75-201ENST00000394705 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 LINC00602-201ENST00000629776 2065 ntBASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
SNRNP40Q96DI7 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 TIMM8A-201ENST00000372902 1664 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 LRP1-204ENST00000553277 1693 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 NOX4-207ENST00000525196 1555 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 P2RY6-204ENST00000393592 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 CCZ1-207ENST00000628813 2218 ntTSL 2 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 DISP3-202ENST00000304391 1495 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 TNFSF14-202ENST00000599359 1476 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 PFKFB3-204ENST00000379785 2181 ntTSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 ARHGAP22-210ENST00000477708 1951 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 EXOSC5-201ENST00000221233 1118 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 DHDH-201ENST00000221403 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 ALKBH6-201ENST00000252984 955 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 IGLL1-202ENST00000330377 901 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 GUK1-202ENST00000366716 940 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 INIP-202ENST00000374236 874 ntTSL 2 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 IMP4-203ENST00000409935 958 ntTSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 DMKN-206ENST00000418261 1257 ntAPPRIS ALT2 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 AFG3L1P-210ENST00000431757 569 ntTSL 4 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 AC002116.1-201ENST00000473572 1130 ntTSL 2 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 AL589182.1-202ENST00000548416 533 ntTSL 4 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 AC025062.2-201ENST00000605477 670 ntBASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 CCL3-204ENST00000613922 778 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 HOTTIP_1.1-201ENST00000620415 57 ntBASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 HMGN3-203ENST00000620514 1010 ntTSL 3 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 MON1A-202ENST00000417270 2527 ntAPPRIS ALT2 TSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 UBE2I-207ENST00000406620 1842 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 PPP1R12C-202ENST00000435544 2363 ntTSL 2 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 CAPS-201ENST00000452990 1789 ntTSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 RNF165-205ENST00000588679 2904 ntBASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 DNAJC28-204ENST00000617313 2237 ntAPPRIS P1 TSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 CPZ-201ENST00000315782 2136 ntAPPRIS P3 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 PLEKHA2-206ENST00000521746 2127 ntTSL 5 BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 KLK5-201ENST00000336334 1563 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
SNRNP40Q96DI7 CD72-201ENST00000259633 1548 ntAPPRIS P2 TSL 1 (best) BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 MLF2-201ENST00000203630 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 SP7-203ENST00000537210 1472 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 DPM3-203ENST00000368400 409 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 C22orf39-203ENST00000399568 1005 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 POM121L12-201ENST00000408890 1283 ntAPPRIS P1 BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 RPS8P6-201ENST00000426177 609 ntBASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 GPX1P2-201ENST00000429271 606 ntBASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 LINC01705-201ENST00000438158 562 ntTSL 2 BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 ZNF436-AS1-203ENST00000454117 997 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 MYL6-203ENST00000536128 1221 ntTSL 2 BASIC16.29■□□□□ 0.2
SNRNP40Q96DI7 MIR3687-2-201ENST00000577708 61 ntBASIC16.29■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 40.5 ms