Protein–RNA interactions for Protein: Q96BD8

SKA1, Spindle and kinetochore-associated protein 1, humanhuman

Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1Q96BD8 CT47A3-201ENST00000441330 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 MCCD1P1-208ENST00000445732 328 ntBASIC18.66■□□□□ 0.58
SKA1Q96BD8 CT47A8-201ENST00000457977 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 CT47A2-201ENST00000458218 1298 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 RNFT2-204ENST00000407967 2415 ntTSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 ATP5L-201ENST00000300688 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 TOR3A-203ENST00000367627 2724 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 PMEPA1-202ENST00000341744 4845 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 MMAB-204ENST00000537236 1342 ntTSL 3 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 B3GALT5-206ENST00000615480 2617 ntAPPRIS P1 TSL 2 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 MCOLN2-201ENST00000284027 1729 ntAPPRIS P1 TSL 5 BASIC18.66■□□□□ 0.58
SKA1Q96BD8 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 DVL2-201ENST00000005340 3018 ntAPPRIS P2 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 PCSK7-201ENST00000320934 4649 ntAPPRIS P1 TSL 1 (best) BASIC18.66■□□□□ 0.58
SKA1Q96BD8 PTTG1IP-203ENST00000397887 2413 ntTSL 4 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 MFHAS1-201ENST00000276282 6414 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 ARL5A-201ENST00000295087 5326 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 NPEPL1-204ENST00000525967 1917 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 AL162741.1-201ENST00000565563 1558 ntBASIC18.65■□□□□ 0.58
SKA1Q96BD8 AC005906.2-207ENST00000639005 1580 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 CDK13-201ENST00000181839 7298 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 ZNF517-201ENST00000359971 2335 ntAPPRIS P1 TSL 4 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 PDE9A-209ENST00000398227 1606 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 AL645929.1-201ENST00000420084 975 ntBASIC18.65■□□□□ 0.58
SKA1Q96BD8 ATP5G2P1-201ENST00000433580 426 ntBASIC18.65■□□□□ 0.58
SKA1Q96BD8 DYDC2-206ENST00000444807 1173 ntAPPRIS P3 TSL 3 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 RPL29-202ENST00000466397 742 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 AC011773.3-202ENST00000549291 790 ntTSL 3 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 MIR3180-5-201ENST00000583743 153 ntBASIC18.65■□□□□ 0.58
SKA1Q96BD8 AC011247.3-202ENST00000605062 570 ntTSL 4 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 TPSB2-201ENST00000606293 1165 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 BCL10-202ENST00000620248 774 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 NDUFAB1-201ENST00000007516 717 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 PPP1R7-201ENST00000234038 2386 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 PPP2R2C-206ENST00000507294 1667 ntTSL 2 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 ZBED3-AS1-208ENST00000512001 1668 ntTSL 3 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 PXK-206ENST00000463280 2825 ntTSL 2 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 SCFD2-204ENST00000611795 1320 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 NR2C2-206ENST00000425241 2494 ntAPPRIS P1 TSL 2 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 CSNK2A2-201ENST00000262506 1701 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 CDH24-201ENST00000267383 2873 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 NLE1-201ENST00000360831 1726 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 FEM1AP3-201ENST00000403722 1741 ntBASIC18.65■□□□□ 0.58
SKA1Q96BD8 CDC14B-208ENST00000463569 1734 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 FZD10-201ENST00000229030 3281 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 GCSH-208ENST00000639169 2537 ntTSL 2 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 DENND1A-203ENST00000373624 5010 ntAPPRIS P4 TSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 TSG101-201ENST00000251968 1824 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 FDXR-202ENST00000413947 1809 ntTSL 2 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 KLHDC4-227ENST00000622456 1422 ntTSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 CDKN1B-201ENST00000228872 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 MAPRE3-201ENST00000233121 1892 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 AC118553.2-202ENST00000638792 2729 ntAPPRIS ALT2 TSL 5 BASIC18.65■□□□□ 0.58
SKA1Q96BD8 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
SKA1Q96BD8 SMARCC2-201ENST00000267064 4076 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.58
SKA1Q96BD8 PDCD7-201ENST00000204549 2851 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.58
SKA1Q96BD8 ICA1-208ENST00000407906 1615 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 ARID1B-202ENST00000346085 10194 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 MYC-205ENST00000524013 2150 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 AC139713.2-201ENST00000641328 2723 ntBASIC18.64■□□□□ 0.57
SKA1Q96BD8 HBZP1-201ENST00000354915 429 ntBASIC18.64■□□□□ 0.57
SKA1Q96BD8 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 SDCBP2-203ENST00000381808 1261 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 AL596442.1-201ENST00000429305 429 ntTSL 2 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 VCX3B-203ENST00000444481 812 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 AC106771.1-201ENST00000502209 372 ntTSL 2 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 LINC02106-201ENST00000506534 606 ntTSL 2 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 NPM2-204ENST00000518119 1190 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 AP003396.3-201ENST00000530918 778 ntTSL 5 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 CLEC4GP1-201ENST00000596555 870 ntBASIC18.64■□□□□ 0.57
SKA1Q96BD8 VCX3A-203ENST00000612369 812 ntAPPRIS ALT2 TSL 5 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 ADORA1-208ENST00000618295 862 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 SMIM29-209ENST00000636500 1186 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 PPAN-P2RY11-201ENST00000393796 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 TEFM-205ENST00000581216 1891 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 PHF20L1-209ENST00000395386 6237 ntAPPRIS P1 TSL 5 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 ESPNP-201ENST00000270691 2015 ntBASIC18.64■□□□□ 0.57
SKA1Q96BD8 RABEPK-202ENST00000373538 1504 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.64■□□□□ 0.57
SKA1Q96BD8 MFSD14A-201ENST00000370152 2777 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 TDRKH-207ENST00000458431 2768 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
SKA1Q96BD8 CNOT6-201ENST00000261951 6176 ntAPPRIS P1 TSL 5 BASIC18.63■□□□□ 0.57
SKA1Q96BD8 ST6GALNAC6-201ENST00000291839 2280 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
SKA1Q96BD8 C21orf58-205ENST00000397683 1674 ntAPPRIS ALT2 TSL 2 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 41 ms