Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 CCDC144A-210ENST00000456009 2306 ntTSL 5 BASIC17.62■□□□□ 0.41
FOXA1P55317 SCARB1-208ENST00000544327 1812 ntTSL 5 BASIC17.62■□□□□ 0.41
FOXA1P55317 PLEKHF2-201ENST00000315367 2881 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 ATP2A2-201ENST00000308664 4453 ntAPPRIS ALT1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 CYSTM1-201ENST00000261811 1336 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 POLR3D-201ENST00000306433 1931 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 ACVRL1-202ENST00000419526 1356 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXA1P55317 OCIAD1-204ENST00000425583 1915 ntTSL 3 BASIC17.62■□□□□ 0.41
FOXA1P55317 AC012313.1-201ENST00000593393 3059 ntBASIC17.62■□□□□ 0.41
FOXA1P55317 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
FOXA1P55317 CCT7-215ENST00000539919 2031 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXA1P55317 ZNF211-211ENST00000541801 2629 ntAPPRIS ALT2 TSL 3 BASIC17.62■□□□□ 0.41
FOXA1P55317 HPCA-201ENST00000373467 1468 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC17.62■□□□□ 0.41
FOXA1P55317 KRT18P55-202ENST00000578578 1546 ntBASIC17.62■□□□□ 0.41
FOXA1P55317 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.62■□□□□ 0.41
FOXA1P55317 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
FOXA1P55317 TMC5-203ENST00000396229 4917 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
FOXA1P55317 ZNF133-210ENST00000535822 2341 ntTSL 3 BASIC17.61■□□□□ 0.41
FOXA1P55317 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC17.61■□□□□ 0.41
FOXA1P55317 NCCRP1-201ENST00000339852 1978 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 CADPS2-208ENST00000615869 6066 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
FOXA1P55317 EPB41L5-203ENST00000443124 2872 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 ZMYND11-214ENST00000509513 2065 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
FOXA1P55317 AIF1L-203ENST00000372298 849 ntTSL 3 BASIC17.61■□□□□ 0.41
FOXA1P55317 HDAC11-203ENST00000402271 1018 ntTSL 3 BASIC17.61■□□□□ 0.41
FOXA1P55317 TSPY15P-201ENST00000457163 923 ntBASIC17.61■□□□□ 0.41
FOXA1P55317 SNORA78-201ENST00000459373 127 ntBASIC17.61■□□□□ 0.41
FOXA1P55317 ETFA-216ENST00000560726 942 ntTSL 3 BASIC17.61■□□□□ 0.41
FOXA1P55317 PTGIR-204ENST00000596260 1009 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXA1P55317 AC116562.4-202ENST00000641738 218 ntBASIC17.61■□□□□ 0.41
FOXA1P55317 C8orf34-206ENST00000518698 2223 ntAPPRIS P2 TSL 2 BASIC17.61■□□□□ 0.41
FOXA1P55317 RTN4-204ENST00000357732 2390 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 PRKRIP1-208ENST00000496391 3430 ntAPPRIS P1 TSL 2 BASIC17.61■□□□□ 0.41
FOXA1P55317 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.61■□□□□ 0.41
FOXA1P55317 PHLDA1-202ENST00000602540 5741 ntAPPRIS ALT2 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 NYX-201ENST00000342595 2713 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 AUTS2-201ENST00000342771 6173 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 GGNBP2-212ENST00000613102 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 KCTD12-201ENST00000377474 6225 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
FOXA1P55317 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC17.61■□□□□ 0.41
FOXA1P55317 DENND5B-201ENST00000354285 3132 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
FOXA1P55317 PARVG-205ENST00000422871 3462 ntAPPRIS P1 TSL 5 BASIC17.6■□□□□ 0.41
FOXA1P55317 PGRMC2-208ENST00000613358 3783 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 EPS8L2-205ENST00000526198 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 DNM1P34-201ENST00000567292 2276 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 CYP2W1-201ENST00000308919 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 UMOD-205ENST00000570689 2315 ntAPPRIS P3 TSL 5 BASIC17.6■□□□□ 0.41
FOXA1P55317 RUBCNL-203ENST00000378787 2731 ntTSL 2 BASIC17.6■□□□□ 0.41
FOXA1P55317 OSBPL1A-204ENST00000399443 3317 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 MIR718-201ENST00000390190 70 ntBASIC17.6■□□□□ 0.41
FOXA1P55317 RHOG-202ENST00000396978 1066 ntAPPRIS P1 TSL 3 BASIC17.6■□□□□ 0.41
FOXA1P55317 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC17.6■□□□□ 0.41
FOXA1P55317 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC17.6■□□□□ 0.41
FOXA1P55317 CDH18-AS1-201ENST00000513573 424 ntTSL 2 BASIC17.6■□□□□ 0.41
FOXA1P55317 DDN-AS1-201ENST00000547395 858 ntTSL 2 BASIC17.6■□□□□ 0.41
FOXA1P55317 C12orf76-208ENST00000551185 496 ntTSL 2 BASIC17.6■□□□□ 0.41
FOXA1P55317 C14orf144-201ENST00000553757 537 ntTSL 4 BASIC17.6■□□□□ 0.41
FOXA1P55317 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 TMEM220-AS1-201ENST00000579114 575 ntTSL 4 BASIC17.6■□□□□ 0.41
FOXA1P55317 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 CROCCP2-205ENST00000639481 1296 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 PIGH-201ENST00000216452 1420 ntAPPRIS P2 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 FBXL17-201ENST00000359660 4510 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 MYBPH-201ENST00000255416 1805 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 ADSL-202ENST00000342312 1808 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 KLHDC3-201ENST00000244670 1903 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 HCK-210ENST00000629881 1969 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
FOXA1P55317 BCL7A-203ENST00000538010 6247 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 SYVN1-201ENST00000294256 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
FOXA1P55317 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 ECE2-205ENST00000404464 3229 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 DMPK-201ENST00000291270 2787 ntAPPRIS P3 TSL 5 BASIC17.59■□□□□ 0.41
FOXA1P55317 SCNN1D-201ENST00000325425 2679 ntAPPRIS ALT2 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
FOXA1P55317 AC005498.3-201ENST00000596587 2045 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 INVS-203ENST00000374921 1654 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 JMJD6-202ENST00000397625 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 FCGRT-202ENST00000426395 1559 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 CYP2D8P-201ENST00000433633 1490 ntBASIC17.59■□□□□ 0.41
FOXA1P55317 KRT8P9-201ENST00000558927 1449 ntBASIC17.59■□□□□ 0.41
FOXA1P55317 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 TRAPPC3-204ENST00000373166 1265 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 MED4-202ENST00000378586 931 ntAPPRIS ALT2 TSL 2 BASIC17.59■□□□□ 0.41
FOXA1P55317 LTB-210ENST00000429299 897 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 PHB2-202ENST00000440277 996 ntTSL 5 BASIC17.59■□□□□ 0.41
FOXA1P55317 AC008825.1-201ENST00000504398 452 ntTSL 3 BASIC17.59■□□□□ 0.41
FOXA1P55317 RPS27A-211ENST00000639844 606 ntTSL 5 BASIC17.59■□□□□ 0.41
FOXA1P55317 AC106820.2-201ENST00000563775 3264 ntBASIC17.59■□□□□ 0.41
FOXA1P55317 PFKL-201ENST00000349048 2912 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 THOP1-201ENST00000307741 4804 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC17.59■□□□□ 0.41
FOXA1P55317 TES-201ENST00000358204 2782 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
FOXA1P55317 ATPAF1-214ENST00000576409 4158 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 23.2 ms