Protein–RNA interactions for Protein: P55283

CDH4, Cadherin-4, humanhuman

Predictions only

Length 916 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH4P55283 FAM131A-202ENST00000340957 2421 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 DKK1-201ENST00000373970 1790 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 AL096828.2-201ENST00000567259 1965 ntBASIC18.55■□□□□ 0.56
CDH4P55283 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 NDUFA10-202ENST00000307300 1313 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 PRKRA-203ENST00000432031 1344 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 STARD7-AS1-202ENST00000446816 1527 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 AP003774.1-201ENST00000316124 2340 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 CHTF8-203ENST00000448552 2903 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 POR-209ENST00000439269 1858 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 DAP3-214ENST00000471642 1671 ntTSL 5 BASIC18.55■□□□□ 0.56
CDH4P55283 PAFAH1B3-201ENST00000262890 1003 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 NEURL2-201ENST00000372518 1278 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 PPIH-202ENST00000372549 327 ntTSL 3 BASIC18.55■□□□□ 0.56
CDH4P55283 AC068472.1-201ENST00000474589 881 ntBASIC18.55■□□□□ 0.56
CDH4P55283 SMIM29-206ENST00000476320 1297 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 ZNF346-205ENST00000506693 1276 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 COX6C-204ENST00000520271 571 ntAPPRIS P1 TSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 CIB2-208ENST00000560618 804 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 MPI-205ENST00000562606 1052 ntTSL 3 BASIC18.55■□□□□ 0.56
CDH4P55283 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC18.55■□□□□ 0.56
CDH4P55283 AC104971.2-201ENST00000588144 1209 ntTSL 2 BASIC18.55■□□□□ 0.56
CDH4P55283 TMIGD2-202ENST00000595645 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 MIMT1-202ENST00000599641 1290 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC18.55■□□□□ 0.56
CDH4P55283 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 TM2D2-201ENST00000397070 1631 ntTSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 PRDM5-201ENST00000264808 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.55■□□□□ 0.56
CDH4P55283 EFTUD1P1-204ENST00000560401 1798 ntBASIC18.55■□□□□ 0.56
CDH4P55283 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.55■□□□□ 0.56
CDH4P55283 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 TSEN34-202ENST00000396383 1548 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 GNS-208ENST00000543646 2164 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CDH4P55283 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC18.54■□□□□ 0.56
CDH4P55283 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC18.54■□□□□ 0.56
CDH4P55283 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC18.54■□□□□ 0.56
CDH4P55283 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 FDXR-217ENST00000582944 1766 ntTSL 2 BASIC18.54■□□□□ 0.56
CDH4P55283 LINC01700-201ENST00000433952 1598 ntTSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 MAZ-212ENST00000568282 1593 ntTSL 5 BASIC18.54■□□□□ 0.56
CDH4P55283 TPGS2-219ENST00000593035 1727 ntAPPRIS ALT2 TSL 2 BASIC18.54■□□□□ 0.56
CDH4P55283 AC008878.3-201ENST00000617428 4964 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 A4GALT-201ENST00000249005 2020 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 FAM91A1-201ENST00000334705 5511 ntAPPRIS P1 TSL 1 (best) BASIC18.54■□□□□ 0.56
CDH4P55283 SDK1-202ENST00000404826 10397 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 CCDC7-203ENST00000362006 2133 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 ZCCHC24-202ENST00000372336 4933 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 BRMS1L-201ENST00000216807 2657 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 CTSH-201ENST00000220166 2190 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 OR10H5-201ENST00000308940 1132 ntAPPRIS P1 BASIC18.53■□□□□ 0.56
CDH4P55283 CXCL12-204ENST00000395793 665 ntTSL 5 BASIC18.53■□□□□ 0.56
CDH4P55283 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.53■□□□□ 0.56
CDH4P55283 TOB2P1-201ENST00000469761 992 ntBASIC18.53■□□□□ 0.56
CDH4P55283 AC105285.1-202ENST00000499322 1866 ntTSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 NDUFB9-202ENST00000517367 636 ntTSL 3 BASIC18.53■□□□□ 0.56
CDH4P55283 BRICD5-203ENST00000566018 555 ntTSL 2 BASIC18.53■□□□□ 0.56
CDH4P55283 AC011840.4-201ENST00000578471 627 ntBASIC18.53■□□□□ 0.56
CDH4P55283 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC18.53■□□□□ 0.56
CDH4P55283 RTBDN-213ENST00000592204 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 ZNF549-203ENST00000594943 556 ntTSL 4 BASIC18.53■□□□□ 0.56
CDH4P55283 AL353801.3-201ENST00000609898 542 ntBASIC18.53■□□□□ 0.56
CDH4P55283 DHRS4L2-211ENST00000621761 1049 ntTSL 5 BASIC18.53■□□□□ 0.56
CDH4P55283 SETD3-209ENST00000630307 1281 ntTSL 5 BASIC18.53■□□□□ 0.56
CDH4P55283 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC18.53■□□□□ 0.56
CDH4P55283 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 HIBADH-201ENST00000265395 1990 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 STX6-201ENST00000258301 4851 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 MICU3-201ENST00000318063 3992 ntAPPRIS P2 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 EEF1D-205ENST00000442189 2207 ntAPPRIS P4 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 FBXO24-202ENST00000427939 2087 ntTSL 2 BASIC18.53■□□□□ 0.56
CDH4P55283 EIPR1-201ENST00000382125 1766 ntAPPRIS P1 TSL 1 (best) BASIC18.53■□□□□ 0.56
CDH4P55283 PTTG1IP-204ENST00000445724 2497 ntTSL 2 BASIC18.52■□□□□ 0.56
CDH4P55283 ACP5-201ENST00000218758 1630 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 ECEL1-201ENST00000304546 2865 ntAPPRIS P3 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC18.52■□□□□ 0.56
CDH4P55283 VIM-201ENST00000224237 1868 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC18.52■□□□□ 0.56
CDH4P55283 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 NBL1-212ENST00000621723 2133 ntAPPRIS P3 TSL 2 BASIC18.52■□□□□ 0.56
CDH4P55283 RNF114-201ENST00000244061 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 TPCN2-201ENST00000294309 2931 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 ERICH1-201ENST00000262109 1813 ntAPPRIS P2 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC18.52■□□□□ 0.56
CDH4P55283 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
CDH4P55283 CST3-202ENST00000398409 832 ntAPPRIS P1 TSL 3 BASIC18.52■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 50.6 ms