Protein–RNA interactions for Protein: P52701

MSH6, DNA mismatch repair protein Msh6, humanhuman

Predictions only

Length 1,360 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6P52701 AC092474.2-201ENST00000424288 719 ntBASIC25.06■■□□□ 1.6
MSH6P52701 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC25.06■■□□□ 1.6
MSH6P52701 SLC25A36-204ENST00000453248 1040 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH6P52701 NDUFA6-202ENST00000498737 1256 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 LARP4-210ENST00000522085 1577 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH6P52701 SFTPC-210ENST00000524255 681 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH6P52701 AC067930.3-201ENST00000524808 701 ntTSL 3 BASIC25.06■■□□□ 1.6
MSH6P52701 MAL2-202ENST00000531508 892 ntTSL 3 BASIC25.06■■□□□ 1.6
MSH6P52701 RNF34-208ENST00000555076 593 ntTSL 3 BASIC25.06■■□□□ 1.6
MSH6P52701 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 NDUFA6-203ENST00000602404 1080 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 LCN8-205ENST00000612714 638 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC25.06■■□□□ 1.6
MSH6P52701 AL359644.1-202ENST00000637541 571 ntTSL 3 BASIC25.06■■□□□ 1.6
MSH6P52701 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 PAQR9-201ENST00000340634 2452 ntAPPRIS P1 BASIC25.06■■□□□ 1.6
MSH6P52701 FAM72B-202ENST00000369390 2396 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 LINC00602-201ENST00000629776 2065 ntBASIC25.06■■□□□ 1.6
MSH6P52701 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 DFNA5-203ENST00000409970 2005 ntTSL 5 BASIC25.06■■□□□ 1.6
MSH6P52701 CLN3-206ENST00000360019 1840 ntTSL 2 BASIC25.06■■□□□ 1.6
MSH6P52701 STX5-202ENST00000377897 1785 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
MSH6P52701 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC25.06■■□□□ 1.6
MSH6P52701 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH6P52701 HLA-J-202ENST00000469281 1241 ntBASIC25.05■■□□□ 1.6
MSH6P52701 AC020659.2-201ENST00000510176 585 ntTSL 4 BASIC25.05■■□□□ 1.6
MSH6P52701 H2AFJ-203ENST00000544848 644 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
MSH6P52701 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC25.05■■□□□ 1.6
MSH6P52701 MIR4751-201ENST00000578027 74 ntBASIC25.05■■□□□ 1.6
MSH6P52701 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC25.05■■□□□ 1.6
MSH6P52701 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC25.05■■□□□ 1.6
MSH6P52701 TOP1MT-218ENST00000523676 1982 ntTSL 5 BASIC25.05■■□□□ 1.6
MSH6P52701 SIX5-203ENST00000560168 1975 ntTSL 4 BASIC25.05■■□□□ 1.6
MSH6P52701 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH6P52701 EBF1-202ENST00000380654 2345 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
MSH6P52701 DPH1-201ENST00000263083 2221 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH6P52701 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH6P52701 NUPR2-201ENST00000329309 603 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH6P52701 H3F3C-201ENST00000340398 1057 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
MSH6P52701 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH6P52701 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
MSH6P52701 AP000344.2-201ENST00000512987 629 ntBASIC25.05■■□□□ 1.6
MSH6P52701 AC127496.4-201ENST00000571591 549 ntTSL 4 BASIC25.05■■□□□ 1.6
MSH6P52701 ARMC7-204ENST00000582136 1204 ntTSL 2 BASIC25.05■■□□□ 1.6
MSH6P52701 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC25.05■■□□□ 1.6
MSH6P52701 METTL23-205ENST00000588302 925 ntTSL 5 BASIC25.05■■□□□ 1.6
MSH6P52701 AC011498.3-201ENST00000590159 569 ntTSL 4 BASIC25.05■■□□□ 1.6
MSH6P52701 OR5AH1P-202ENST00000597822 431 ntTSL 3 BASIC25.05■■□□□ 1.6
MSH6P52701 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 PMPCAP1-201ENST00000508114 1576 ntBASIC25.04■■□□□ 1.6
MSH6P52701 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC25.04■■□□□ 1.6
MSH6P52701 S1PR5-201ENST00000333430 2341 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 TPSAB1-202ENST00000461509 1357 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC25.04■■□□□ 1.6
MSH6P52701 PRR14-202ENST00000300835 2198 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 FBXL20-205ENST00000583610 1739 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
MSH6P52701 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 CAMKMT-204ENST00000407131 652 ntTSL 3 BASIC25.04■■□□□ 1.6
MSH6P52701 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC25.04■■□□□ 1.6
MSH6P52701 HCG4B-203ENST00000450128 991 ntBASIC25.04■■□□□ 1.6
MSH6P52701 AC108073.2-201ENST00000464002 357 ntBASIC25.04■■□□□ 1.6
MSH6P52701 STT3A-AS1-201ENST00000530526 429 ntTSL 3 BASIC25.04■■□□□ 1.6
MSH6P52701 CCND1-203ENST00000536559 553 ntTSL 3 BASIC25.04■■□□□ 1.6
MSH6P52701 RPL28-205ENST00000558131 444 ntTSL 5 BASIC25.04■■□□□ 1.6
MSH6P52701 AL031432.2-201ENST00000566714 459 ntBASIC25.04■■□□□ 1.6
MSH6P52701 AL928711.1-201ENST00000570165 459 ntBASIC25.04■■□□□ 1.6
MSH6P52701 AC093512.1-201ENST00000617969 520 ntBASIC25.04■■□□□ 1.6
MSH6P52701 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 HNRNPLL-203ENST00000378915 2523 ntTSL 5 BASIC25.04■■□□□ 1.6
MSH6P52701 VWA8-AS1-201ENST00000611103 2079 ntTSL 2 BASIC25.04■■□□□ 1.6
MSH6P52701 ME2-218ENST00000640965 2476 ntTSL 5 BASIC25.04■■□□□ 1.6
MSH6P52701 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
MSH6P52701 MRFAP1-201ENST00000320912 2049 ntAPPRIS P1 TSL 2 BASIC25.04■■□□□ 1.6
MSH6P52701 ZNF385C-201ENST00000436535 1572 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
MSH6P52701 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC25.03■■□□□ 1.6
MSH6P52701 ACHE-204ENST00000412389 2218 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 GPSM3-206ENST00000375040 1476 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 MUTYH-203ENST00000372098 1839 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 MUTYH-204ENST00000372104 1823 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 MUTYH-205ENST00000372110 1809 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 SPSB1-202ENST00000357898 1439 ntAPPRIS P1 TSL 5 BASIC25.03■■□□□ 1.6
MSH6P52701 COQ10A-202ENST00000433805 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 DIO1-201ENST00000322679 1658 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 DIO1-217ENST00000617230 1656 ntTSL 5 BASIC25.03■■□□□ 1.6
MSH6P52701 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 AL139400.1-201ENST00000366220 510 ntBASIC25.03■■□□□ 1.6
MSH6P52701 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
MSH6P52701 TRAPPC3-203ENST00000373163 951 ntTSL 3 BASIC25.03■■□□□ 1.6
MSH6P52701 SNHG11-204ENST00000420006 720 ntTSL 3 BASIC25.03■■□□□ 1.6
MSH6P52701 SNHG11-206ENST00000432153 1181 ntTSL 3 BASIC25.03■■□□□ 1.6
MSH6P52701 TMEM263-206ENST00000550344 925 ntAPPRIS P1 TSL 2 BASIC25.03■■□□□ 1.6
MSH6P52701 SPATA33-208ENST00000568929 1264 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
MSH6P52701 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC25.03■■□□□ 1.6
MSH6P52701 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC25.03■■□□□ 1.6
MSH6P52701 PLEKHG2-202ENST00000409797 2205 ntAPPRIS ALT2 TSL 2 BASIC25.03■■□□□ 1.6
MSH6P52701 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
MSH6P52701 BAIAP2L2-201ENST00000332536 2065 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
MSH6P52701 FAM129C-208ENST00000599164 2073 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
Retrieved 100 of 98,524 protein–RNA pairs in 41.2 ms